Variant report

Variant	rs74086205
Chromosome Location	chr13:52111272-52111273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52096223..52098756-chr13:52108625..52111484,2	MCF-7	breast:
2	chr13:52025558..52028452-chr13:52109917..52111699,2	MCF-7	breast:
3	chr13:52108221..52111487-chr13:52112339..52115268,3	K562	blood:

Variant related genes	Relation type
ENSG00000224892	Chromatin interaction
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12561532	1.00[ASN][1000 genomes]
rs9563058	0.86[ASN][1000 genomes]
rs9563062	0.98[ASN][1000 genomes]
rs9568622	0.91[ASN][1000 genomes]
rs9568623	0.91[ASN][1000 genomes]
rs9568624	0.86[ASN][1000 genomes]
rs9568625	0.86[ASN][1000 genomes]
rs9568631	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568632	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52100200-52113800	Weak transcription	NHDF-Ad	bronchial
2	chr13:52100600-52113000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:52107000-52114000	Weak transcription	Osteobl	bone
4	chr13:52107200-52111400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr13:52107200-52112200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr13:52107200-52112400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr13:52107200-52112400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr13:52107200-52112600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr13:52107200-52114200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:52107200-52116600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:52107400-52112800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr13:52108200-52116200	Weak transcription	Right Atrium	heart
13	chr13:52108400-52112800	Weak transcription	HepG2	liver
14	chr13:52108800-52113200	Weak transcription	Fetal Muscle Leg	muscle
15	chr13:52108800-52113800	Weak transcription	A549	lung
16	chr13:52109000-52112800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr13:52109000-52112800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr13:52109000-52113000	Weak transcription	Fetal Thymus	thymus
19	chr13:52109000-52114000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr13:52109000-52116200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr13:52109000-52116400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr13:52109200-52112400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr13:52109200-52112600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr13:52109200-52112800	Weak transcription	HSMM	muscle
25	chr13:52109200-52112800	Weak transcription	HSMMtube	muscle
26	chr13:52109200-52113800	Weak transcription	NHEK	skin
27	chr13:52109200-52114000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr13:52109400-52112800	Weak transcription	Hela-S3	cervix
29	chr13:52109400-52113800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr13:52109400-52114000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr13:52109600-52112800	Weak transcription	Brain Anterior Caudate	brain
32	chr13:52109600-52113800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr13:52109600-52114000	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr13:52109800-52112200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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