Variant report

Variant	rs9568622
Chromosome Location	chr13:52100472-52100473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52097892..52100856-chr13:52116371..52118761,2	MCF-7	breast:
2	chr13:52021229..52031054-chr13:52088479..52100505,23	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224892	Chromatin interaction
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12561532	0.91[ASN][1000 genomes]
rs74086205	0.91[ASN][1000 genomes]
rs7984158	0.85[CHB][hapmap]
rs7995478	1.00[CHB][hapmap]
rs8000433	0.85[CHB][hapmap]
rs9563058	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9563062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9568623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568624	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9568625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9568631	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs9568632	0.91[ASN][1000 genomes]
rs9568635	0.82[JPT][hapmap]
rs9568646	0.82[JPT][hapmap]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52094800-52100800	Enhancers	Hela-S3	cervix
2	chr13:52096600-52100600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr13:52097000-52100600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:52097000-52100600	Enhancers	Osteobl	bone
5	chr13:52097200-52100600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr13:52097200-52100600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr13:52097200-52100800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:52097600-52108600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr13:52098200-52100800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr13:52098200-52101000	Enhancers	HepG2	liver
11	chr13:52098200-52106800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr13:52098800-52100600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr13:52098800-52100600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr13:52098800-52100600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr13:52098800-52100600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr13:52098800-52101000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr13:52098800-52106800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr13:52099000-52100800	Enhancers	A549	lung
19	chr13:52099000-52101000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr13:52099400-52100600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr13:52099600-52100600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr13:52099800-52100600	Enhancers	H9 Cell Line	embryonic stem cell
23	chr13:52099800-52100600	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr13:52099800-52106400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr13:52099800-52107000	Weak transcription	HMEC	breast
26	chr13:52100000-52100600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr13:52100000-52101200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr13:52100200-52107000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr13:52100200-52113800	Weak transcription	NHDF-Ad	bronchial
30	chr13:52100400-52100600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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