Variant report

Variant	rs9568635
Chromosome Location	chr13:52139113-52139114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12584416	1.00[CEU][hapmap]
rs17531150	1.00[AFR][1000 genomes]
rs17597960	1.00[AFR][1000 genomes]
rs4942997	1.00[CEU][hapmap]
rs61958305	1.00[AMR][1000 genomes]
rs73197856	1.00[AFR][1000 genomes]
rs7329391	0.86[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap]
rs9563055	1.00[CEU][hapmap]
rs9563062	0.82[JPT][hapmap]
rs9568622	0.82[JPT][hapmap]
rs9568646	0.85[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs9568667	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52137800-52139400	Enhancers	Hela-S3	cervix
2	chr13:52138000-52139400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr13:52138800-52139200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:52139000-52139600	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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