The 2.0 version of rSNPBase

Variant report

Variant rs73197856
Chromosome Location chr13:52271584-52271585
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:52234000-52277800 Weak transcription Stomach Smooth Muscle stomach
2 chr13:52247200-52277400 Weak transcription Primary T helper cells fromperipheralblood blood
3 chr13:52247600-52300200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
4 chr13:52247600-52300200 Weak transcription Fetal Lung lung
5 chr13:52249400-52307600 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr13:52254400-52273200 Weak transcription Pancreas Pancrea
7 chr13:52254600-52293000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
8 chr13:52254600-52301800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr13:52255400-52273200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr13:52255600-52273200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr13:52256400-52277800 Weak transcription HSMMtube muscle
12 chr13:52258000-52273400 Weak transcription Primary hematopoietic stem cells blood
13 chr13:52258000-52280400 Weak transcription Primary hematopoietic stem cells short term culture blood
14 chr13:52258600-52271600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr13:52258600-52273400 Weak transcription NHEK skin
16 chr13:52259200-52278000 Weak transcription Primary T cells from cord blood blood
17 chr13:52259400-52273200 Weak transcription Monocytes-CD14+_RO01746 blood
18 chr13:52259400-52277800 Weak transcription Primary monocytes fromperipheralblood blood
19 chr13:52261000-52273800 Weak transcription Primary B cells from cord blood blood
20 chr13:52263400-52273200 Weak transcription Gastric stomach
21 chr13:52263400-52295600 Weak transcription Duodenum Smooth Muscle Duodenum
22 chr13:52264000-52277600 Weak transcription NH-A brain
23 chr13:52264000-52300000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr13:52264200-52273000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr13:52264200-52277600 Weak transcription HepG2 liver
26 chr13:52264200-52277800 Weak transcription HMEC breast
27 chr13:52264200-52277800 Weak transcription HSMM muscle
28 chr13:52264200-52278000 Weak transcription Breast Myoepithelial Primary Cells Breast
29 chr13:52264200-52280800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
30 chr13:52269000-52273200 Weak transcription H9 Cell Line embryonic stem cell
31 chr13:52269800-52278800 Weak transcription Primary T cells fromperipheralblood blood
32 chr13:52270400-52272200 Enhancers HUVEC blood vessel
33 chr13:52270400-52273200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr13:52270400-52277800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr13:52270400-52279000 Weak transcription Esophagus oesophagus
36 chr13:52270400-52293200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
37 chr13:52270600-52272400 Enhancers Muscle Satellite Cultured Cells --
38 chr13:52270600-52272600 Enhancers Osteobl bone
39 chr13:52270600-52273200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr13:52270800-52272200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr13:52270800-52272200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr13:52270800-52272400 Enhancers NHDF-Ad bronchial
43 chr13:52270800-52278000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr13:52270800-52301600 Weak transcription H1 Cell Line embryonic stem cell
45 chr13:52271200-52278200 Weak transcription iPS-20b Cell Line embryonic stem cell
46 chr13:52271200-52301800 Weak transcription HUES64 Cell Line embryonic stem cell
47 chr13:52271400-52271800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
48 chr13:52271400-52271800 Enhancers Left Ventricle heart
49 chr13:52271400-52272400 Enhancers NHLF lung

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Last update: Aug 31, 2015