Variant report

Variant	rs17531150
Chromosome Location	chr13:52162408-52162409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr13:52162333-52162411	K562	blood:	n/a	n/a
2	MAFK	chr13:52162296-52162527	HepG2	liver:	n/a	chr13:52162409-52162424 chr13:52162409-52162425 chr13:52162406-52162422 chr13:52162404-52162424 chr13:52162413-52162424 chr13:52162407-52162421
3	STAT3	chr13:52162406-52162537	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr13:52161486-52162691	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr13:52160060..52163108-chr13:52376667..52378456,3	K562	blood:
2	chr13:52161646..52163568-chr13:52308170..52310143,2	MCF-7	breast:
3	chr13:52162017..52163554-chr13:52169450..52171353,2	MCF-7	breast:
4	chr13:52015950..52029988-chr13:52150583..52166755,85	MCF-7	breast:
5	chr13:52009973..52011710-chr13:52162092..52163750,2	MCF-7	breast:
6	chr13:52022285..52029211-chr13:52148229..52167071,88	MCF-7	breast:
7	chr13:52161931..52163460-chr13:52168528..52170984,2	K562	blood:
8	chr13:52157062..52162024-chr13:52162079..52168293,13	MCF-7	breast:
9	chr13:52158311..52160568-chr13:52160634..52165811,6	MCF-7	breast:
10	chr13:52160060..52162638-chr13:52376878..52378456,2	K562	blood:
11	chr13:52162012..52164876-chr13:52292146..52294870,2	K562	blood:
12	chr13:52025295..52029108-chr13:52160696..52165765,10	K562	blood:

Variant related genes	Relation type
RNY1P6	TF binding region
ENSG00000139668	Chromatin interaction
ENSG00000224892	Chromatin interaction
ENSG00000102796	Chromatin interaction
ENSG00000231856	Chromatin interaction
ENSG00000206920	Chromatin interaction
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction

rs_ID	r²[population]
rs17597960	1.00[AFR][1000 genomes]
rs73197856	1.00[AFR][1000 genomes]
rs73199785	1.00[AFR][1000 genomes]
rs9568635	1.00[AFR][1000 genomes]

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52159600-52162600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:52159600-52165000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr13:52159600-52165200	Weak transcription	Gastric	stomach
4	chr13:52159600-52165200	Weak transcription	Small Intestine	intestine
5	chr13:52159600-52170600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:52159600-52174600	Weak transcription	Spleen	Spleen
7	chr13:52159800-52162600	Weak transcription	Esophagus	oesophagus
8	chr13:52160000-52162600	Weak transcription	Fetal Intestine Large	intestine
9	chr13:52160000-52164200	Weak transcription	Liver	Liver
10	chr13:52160000-52165000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr13:52160200-52162600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr13:52160200-52163200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr13:52160200-52164000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr13:52160200-52164600	Weak transcription	Fetal Heart	heart
15	chr13:52160200-52165000	Weak transcription	Fetal Muscle Leg	muscle
16	chr13:52160200-52165000	Weak transcription	Fetal Stomach	stomach
17	chr13:52160200-52165200	Weak transcription	Fetal Kidney	kidney
18	chr13:52160200-52165200	Weak transcription	Left Ventricle	heart
19	chr13:52160200-52165200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr13:52160200-52165200	Weak transcription	Stomach Mucosa	stomach
21	chr13:52160200-52166000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr13:52160200-52166600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr13:52160200-52168000	Weak transcription	Pancreas	Pancrea
24	chr13:52160200-52170800	Weak transcription	Fetal Intestine Small	intestine
25	chr13:52160200-52181400	Weak transcription	Thymus	Thymus
26	chr13:52160400-52162600	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr13:52160400-52162600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr13:52160400-52162600	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr13:52160400-52162600	Weak transcription	Psoas Muscle	Psoas
30	chr13:52160400-52163000	Active TSS	GM12878-XiMat	blood
31	chr13:52160400-52163200	Enhancers	A549	lung
32	chr13:52160400-52163800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr13:52160400-52164000	Weak transcription	HUVEC	blood vessel
34	chr13:52160400-52165600	Weak transcription	Colon Smooth Muscle	Colon
35	chr13:52160400-52173400	Weak transcription	Right Atrium	heart
36	chr13:52160400-52177000	Weak transcription	Right Ventricle	heart
37	chr13:52160600-52165600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr13:52160600-52169400	Weak transcription	Primary B cells from peripheral blood	blood
39	chr13:52160600-52172200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr13:52160800-52163800	Weak transcription	Fetal Lung	lung
41	chr13:52160800-52163800	Weak transcription	NH-A	brain
42	chr13:52160800-52164200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
43	chr13:52160800-52164600	Enhancers	NHLF	lung
44	chr13:52160800-52165200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr13:52160800-52166000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr13:52160800-52166200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr13:52160800-52166200	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr13:52160800-52168000	Weak transcription	Primary T cells from cord blood	blood
49	chr13:52161000-52163200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr13:52161000-52163800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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