Variant report

Variant	rs59704058
Chromosome Location	chr13:90585572-90585573
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:34)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:90585208..90586708-chr5:112359217..112360718,2	K562	blood:
2	chr11:62609120..62610720-chr13:90583687..90586690,7	MCF-7	breast:
3	chr13:90585193..90585714-chr17:41465692..41466303,3	MCF-7	breast:
4	chr11:62607620..62610723-chr13:90583687..90586713,24	K562	blood:
5	chr13:90583692..90586688-chr19:17578817..17580337,4	K562	blood:
6	chr13:90585211..90585713-chr17:41465718..41466279,2	MCF-7	breast:
7	chr13:90583687..90586712-chr17:41464190..41467215,16	MCF-7	breast:
8	chr13:90585187..90586690-chr17:41391871..41393483,2	K562	blood:
9	chr13:90583688..90586717-chr17:41462314..41468297,22	MCF-7	breast:
10	chr13:90583690..90586693-chr17:41399057..41402525,7	MCF-7	breast:
11	chr13:90583687..90586717-chr17:41462292..41467922,26	K562	blood:
12	chr13:90583689..90586712-chr3:73158226..73161621,17	K562	blood:
13	chr13:90585210..90586713-chr17:41438934..41440457,2	MCF-7	breast:
14	chr10:119001200..119002700-chr13:90585187..90586694,2	MCF-7	breast:
15	chr13:90583687..90586713-chr17:41398976..41402652,13	K562	blood:
16	chr13:90583692..90586708-chr3:73158452..73160131,4	MCF-7	breast:
17	chr13:90585188..90585713-chr17:41465840..41466365,3	NB4	blood:
18	chr10:103124608..103126131-chr13:90583695..90586710,5	K562	blood:
19	chr11:17098980..17099684-chr13:90585188..90585688,2	NB4	blood:
20	chr13:90583688..90586693-chr17:41398768..41401424,4	MCF-7	breast:
21	chr13:90585210..90586715-chr17:41444056..41446712,3	K562	blood:
22	chr11:10961117..10964097-chr13:90585214..90586717,2	K562	blood:
23	chr13:90585195..90585712-chr17:41465633..41466487,2	HCT-116	colon:
24	chr13:90583709..90586687-chr17:41393021..41394646,2	MCF-7	breast:
25	chr10:103123126..103126131-chr13:90583690..90586710,7	MCF-7	breast:
26	chr11:62607620..62610723-chr13:90583688..90586715,22	K562	blood:
27	chr13:90583687..90586714-chr17:41380307..41383673,9	K562	blood:
28	chr13:90583689..90586717-chr17:41462129..41467972,24	K562	blood:
29	chr13:90583716..90586691-chr20:18805537..18807037,2	K562	blood:
30	chr13:90583690..90586712-chr3:73158444..73161594,14	K562	blood:
31	chr13:90583687..90586713-chr17:41380286..41383689,12	K562	blood:
32	chr13:90585208..90586716-chr17:41380446..41383729,6	MCF-7	breast:
33	chr13:90583687..90586717-chr17:41398743..41402502,9	K562	blood:
34	chr13:90583692..90586688-chrX:77930321..77933319,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000225936	Chromatin interaction
ENSG00000223247	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000236383	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000110700	Chromatin interaction
ENSG00000222414	Chromatin interaction
ENSG00000130304	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs59854836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61675202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9583733	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422378	chr13:90280619-90799585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv3330508	chr13:90401807-90835334	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1039817	chr13:90425965-90884271	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1054500	chr13:90427793-90879758	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv541867	chr13:90427793-90879758	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv456064	chr13:90429193-90886078	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
7	nsv562644	chr13:90429193-90886078	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
8	nsv430596	chr13:90467099-90659399	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv1036137	chr13:90509098-90772092	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv541868	chr13:90509098-90772092	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv1047307	chr13:90509098-90849504	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
12	nsv541869	chr13:90509098-90849504	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
13	nsv1044540	chr13:90509098-91497974	Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
14	nsv541870	chr13:90509098-91497974	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
15	nsv976252	chr13:90567002-90602202	Enhancers Active TSS Weak transcription	Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
16	nsv983754	chr13:90573353-90585902	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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