Variant report

Variant	rs59710185
Chromosome Location	chr6:36611169-36611170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:44)
CpG islands
(count:61)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:44 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HEY1	chr6:36610726-36611207	HepG2	liver:	n/a	n/a
2	NFIC	chr6:36610768-36611271	SK-N-SH	brain:	n/a	n/a
3	NFIC	chr6:36610605-36611327	HepG2	liver:	n/a	n/a
4	MYC	chr6:36611019-36611283	HepG2	liver:	n/a	n/a
5	FOS	chr6:36610737-36611184	MCF10A-Er-Src	breast:	n/a	chr6:36611084-36611094 chr6:36611085-36611093
6	MAX	chr6:36610679-36611243	Hela-S3	cervix:	n/a	n/a
7	HNF4A	chr6:36610780-36611181	HepG2	liver:	n/a	chr6:36610963-36610978 chr6:36610963-36610978 chr6:36610846-36610853 chr6:36610964-36610976
8	POLR2A	chr6:36610768-36611407	Hela-S3	cervix:	n/a	n/a
9	REST	chr6:36610899-36611182	PFSK-1	brain:	n/a	chr6:36611006-36611026
10	POLR2A	chr6:36610986-36611301	A549	lung:	n/a	n/a
11	POLR2A	chr6:36610976-36611187	Hela-S3	cervix:	n/a	n/a
12	POLR2A	chr6:36611052-36611233	A549	lung:	n/a	n/a
13	MYC	chr6:36610879-36611176	MCF10A-Er-Src	breast:	n/a	n/a
14	NR3C1	chr6:36610843-36611178	A549	lung:	n/a	n/a
15	SMARCC1	chr6:36610427-36611587	Hela-S3	cervix:	n/a	chr6:36611085-36611094
16	JUND	chr6:36610810-36611182	HepG2	liver:	n/a	chr6:36611084-36611094 chr6:36611085-36611093
17	POLR2A	chr6:36610778-36611244	HepG2	liver:	n/a	n/a
18	FOSL2	chr6:36610593-36611324	HepG2	liver:	n/a	chr6:36611084-36611094 chr6:36611085-36611093
19	GTF2F1	chr6:36610710-36611431	Hela-S3	cervix:	n/a	n/a
20	NR3C1	chr6:36610811-36611283	A549	lung:	n/a	n/a
21	MYBL2	chr6:36610520-36611370	HepG2	liver:	n/a	n/a
22	FOSL2	chr6:36610767-36611270	A549	lung:	n/a	chr6:36611084-36611094 chr6:36611085-36611093
23	ARID3A	chr6:36610787-36611274	HepG2	liver:	n/a	n/a
24	ZNF263	chr6:36610602-36611480	HEK293-T-REx	kidney:	n/a	n/a
25	NFIC	chr6:36610698-36611445	SK-N-SH	brain:	n/a	n/a
26	POLR2A	chr6:36610858-36611202	HCT-116	colon:	n/a	n/a
27	FOS	chr6:36610849-36611199	MCF10A-Er-Src	breast:	n/a	chr6:36611084-36611094 chr6:36611085-36611093
28	JUND	chr6:36610903-36611199	HepG2	liver:	n/a	chr6:36611084-36611094 chr6:36611085-36611093
29	FOXA1	chr6:36610780-36611693	HepG2	liver:	n/a	n/a
30	MAX	chr6:36611114-36611227	HepG2	liver:	n/a	n/a
31	YY1	chr6:36610914-36611376	HepG2	liver:	n/a	n/a
32	POLR2A	chr6:36611026-36611247	A549	lung:	n/a	n/a
33	POLR2A	chr6:36610906-36611232	HCT-116	colon:	n/a	n/a
34	FOS	chr6:36610859-36611227	MCF10A-Er-Src	breast:	n/a	chr6:36611084-36611094 chr6:36611085-36611093
35	MYBL2	chr6:36610463-36611670	HepG2	liver:	n/a	n/a
36	NFIC	chr6:36610774-36611369	ECC-1	luminal epithelium:	n/a	n/a
37	CHD2	chr6:36610875-36611428	Hela-S3	cervix:	n/a	n/a
38	POLR2A	chr6:36611043-36611179	A549	lung:	n/a	n/a
39	RCOR1	chr6:36610650-36611458	Hela-S3	cervix:	n/a	n/a
40	FOSL2	chr6:36610859-36611362	SK-N-SH	brain:	n/a	chr6:36611084-36611094 chr6:36611085-36611093
41	MXI1	chr6:36610675-36611253	HepG2	liver:	n/a	n/a
42	HDAC2	chr6:36610836-36611270	HepG2	liver:	n/a	chr6:36611006-36611025
43	MYC	chr6:36610977-36611226	MCF10A-Er-Src	breast:	n/a	n/a
44	MAX	chr6:36610827-36611510	A549	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:36611140-36611190	AG04450	lung:	fetal
2	chr6:36611140-36611190	Caco-2	colon:	n/a
3	chr6:36611140-36611190	NHDF-neo	bronchial:	n/a
4	chr6:36611140-36611190	AG04449	skin:	fetal
5	chr6:36611140-36611190	HAEpiC	amniotic membrane:	n/a
6	chr6:36611140-36611190	Jurkat	blood:	n/a
7	chr6:36611140-36611190	HIPEpiC	eye:	n/a
8	chr6:36611140-36611190	HMEC	breast:	n/a
9	chr6:36611140-36611190	BJ	skin:	n/a
10	chr6:36611140-36611190	AoSMC	blood vessel:	n/a
11	chr6:36611140-36611190	CMK	blood:	n/a
12	chr6:36611140-36611190	GM06990	blood:	n/a
13	chr6:36611140-36611190	Hela-S3	cervix:	n/a
14	chr6:36611140-36611190	RPTEC	kidney:	n/a
15	chr6:36611140-36611190	ProgFib	skin:	n/a
16	chr6:36611140-36611190	SK-N-MC	brain:	n/a
17	chr6:36611140-36611190	AG10803	skin:	n/a
18	chr6:36611140-36611190	SK-N-SH_RA	brain:	n/a
19	chr6:36611140-36611190	ovcar-3	ovarian:	n/a
20	chr6:36611140-36611190	AG09309	skin:	n/a
21	chr6:36611140-36611190	HRCEpiC	kidney:	n/a
22	chr6:36611140-36611190	GM12878	blood:	n/a
23	chr6:36611140-36611190	BE2_C	brain:	n/a
24	chr6:36611140-36611190	A549	lung:	n/a
25	chr6:36611140-36611190	HEK293	kidney:	embryo
26	chr6:36611140-36611190	MCF10A-Er-Src	breast:	n/a
27	chr6:36611140-36611190	GM19239	blood:	n/a
28	chr6:36611140-36611190	GM12892	blood:	n/a
29	chr6:36611140-36611190	HEEpiC	esophagus:	n/a
30	chr6:36611140-36611190	Hepatocyte	liver:	n/a
31	chr6:36611140-36611190	SAEC	small airway:	n/a
32	chr6:36611140-36611190	SKMC	muscle:	n/a
33	chr6:36611140-36611190	HRPEpiC	eye:	n/a
34	chr6:36611140-36611190	GM12891	blood:	n/a
35	chr6:36611140-36611190	PrEC	prostate:	n/a
36	chr6:36611140-36611190	H1-hESC	embryonic stem cell:	embryo
37	chr6:36611140-36611190	ECC-1	luminal epithelium:	n/a
38	chr6:36611140-36611190	HepG2	liver:	n/a
39	chr6:36611140-36611190	K562	blood:	n/a
40	chr6:36611140-36611190	NB4	blood:	n/a
41	chr6:36611140-36611190	HCF	heart:	n/a
42	chr6:36611140-36611190	LNCaP	prostate:	n/a
43	chr6:36611140-36611190	HCT-116	colon:	n/a
44	chr6:36611140-36611190	PFSK-1	brain:	n/a
45	chr6:36611140-36611190	PANC-1	pancreas:	n/a
46	chr6:36611140-36611190	T-47D	breast:	n/a
47	chr6:36611140-36611190	MCF-7	breast:	n/a
48	chr6:36611140-36611190	HCM	heart:	n/a
49	chr6:36611140-36611190	HRE	kidney:	n/a
50	chr6:36611140-36611190	NHBE	bronchial:	n/a

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36610331..36612483-chr6:36620560..36622921,2	MCF-7	breast:
2	chr6:36610496..36612742-chr6:36646504..36648045,2	K562	blood:
3	chr6:36609545..36611321-chr6:36645281..36647113,2	MCF-7	breast:
4	chr6:36609486..36615115-chr6:36644680..36648006,7	MCF-7	breast:
5	chr6:36611017..36614815-chr6:36692624..36695371,3	K562	blood:
6	chr6:36560615..36563648-chr6:36609747..36613037,3	K562	blood:
7	chr6:36609889..36612483-chr6:36632704..36634800,2	MCF-7	breast:
8	chr6:36609963..36611996-chr6:36646327..36648004,2	K562	blood:
9	chr6:36608940..36611586-chr6:36633683..36636371,2	MCF-7	breast:
10	chr6:36595347..36597183-chr6:36609733..36612539,2	MCF-7	breast:
11	chr6:36609790..36612308-chr6:36629245..36631254,2	MCF-7	breast:

No data

Variant related genes	Relation type
RNU1-88P	TF binding region
RNU1-88P	CpG island
ENSG00000112081	Chromatin interaction
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28655492	1.00[AMR][1000 genomes]
rs57069130	1.00[AMR][1000 genomes]
rs57305886	1.00[AMR][1000 genomes]
rs57882234	1.00[AMR][1000 genomes]
rs58860412	1.00[AMR][1000 genomes]
rs60233032	1.00[AMR][1000 genomes]
rs60493278	1.00[AMR][1000 genomes]
rs60908479	1.00[AMR][1000 genomes]
rs6901597	1.00[AMR][1000 genomes]
rs6902434	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
2	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36603000-36612800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:36605400-36611200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:36605600-36611400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:36608600-36612600	Enhancers	Fetal Intestine Small	intestine
5	chr6:36608800-36611800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:36608800-36612200	Enhancers	Liver	Liver
7	chr6:36608800-36612600	Enhancers	Fetal Intestine Large	intestine
8	chr6:36608800-36613000	Enhancers	Duodenum Mucosa	Duodenum
9	chr6:36609000-36611200	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr6:36609000-36613000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:36609600-36612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:36609600-36617000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:36610400-36611600	Enhancers	Left Ventricle	heart
14	chr6:36610400-36611600	Enhancers	Small Intestine	intestine
15	chr6:36610400-36611600	Flanking Active TSS	Hela-S3	cervix
16	chr6:36610400-36611800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr6:36610400-36612000	Enhancers	Colonic Mucosa	Colon
18	chr6:36610400-36612000	Flanking Active TSS	HepG2	liver
19	chr6:36610400-36612600	Enhancers	Ovary	ovary
20	chr6:36610400-36612800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:36610400-36612800	Enhancers	Osteobl	bone
22	chr6:36610400-36613200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:36610400-36613200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:36610400-36613200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:36610400-36613200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:36610400-36613200	Enhancers	HMEC	breast
27	chr6:36610600-36611600	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr6:36610600-36611600	Enhancers	HSMMtube	muscle
29	chr6:36610600-36612000	Enhancers	Brain Hippocampus Middle	brain
30	chr6:36610600-36612000	Enhancers	Colon Smooth Muscle	Colon
31	chr6:36610600-36612000	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr6:36610600-36612000	Enhancers	Fetal Heart	heart
33	chr6:36610600-36612000	Enhancers	Stomach Mucosa	stomach
34	chr6:36610600-36612000	Enhancers	NH-A	brain
35	chr6:36610600-36613000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:36610600-36613000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:36610600-36613200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:36610600-36613200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:36610600-36613200	Enhancers	Muscle Satellite Cultured Cells	--
40	chr6:36610600-36613200	Enhancers	HSMM	muscle
41	chr6:36610600-36613200	Enhancers	NHDF-Ad	bronchial
42	chr6:36610600-36613200	Enhancers	NHEK	skin
43	chr6:36610600-36613400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr6:36610600-36613400	Enhancers	NHLF	lung
45	chr6:36610800-36611400	Enhancers	HUVEC	blood vessel
46	chr6:36610800-36611600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:36610800-36611600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:36610800-36611600	Enhancers	Gastric	stomach
49	chr6:36610800-36611600	Enhancers	Rectal Smooth Muscle	rectum
50	chr6:36610800-36612000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links