Variant report

Variant	rs57882234
Chromosome Location	chr6:36438834-36438835
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36437874..36441513-chr6:36442107..36445031,4	K562	blood:
2	chr6:36408380..36411349-chr6:36438111..36440624,2	K562	blood:
3	chr6:36438735..36444025-chr6:36445712..36451079,5	K562	blood:
4	chr6:36437239..36439073-chr6:36444524..36446195,2	MCF-7	breast:
5	chr6:36437672..36440235-chr6:36445190..36447212,2	K562	blood:
6	chr6:36438533..36440442-chr6:36481123..36483555,2	K562	blood:
7	chr6:36437549..36439199-chr6:36440749..36443302,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112078	Chromatin interaction
ENSG00000179165	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1322647	1.00[AMR][1000 genomes]
rs28655492	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs536563	1.00[AMR][1000 genomes]
rs57069130	1.00[AMR][1000 genomes]
rs57305886	1.00[AMR][1000 genomes]
rs58860412	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59710185	1.00[AMR][1000 genomes]
rs60233032	1.00[AMR][1000 genomes]
rs60493278	1.00[AMR][1000 genomes]
rs60908479	1.00[AMR][1000 genomes]
rs615402	1.00[AMR][1000 genomes]
rs632643	1.00[AMR][1000 genomes]
rs6901597	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6902434	1.00[AMR][1000 genomes]
rs9368932	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36411600-36439800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:36411600-36476400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:36411800-36439400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:36412200-36449200	Weak transcription	Esophagus	oesophagus
5	chr6:36412600-36439200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:36412600-36449000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:36412800-36443400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:36412800-36447000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:36412800-36448600	Weak transcription	HMEC	breast
10	chr6:36413400-36439200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:36417200-36439000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:36417200-36439200	Weak transcription	Brain Anterior Caudate	brain
13	chr6:36417600-36439200	Weak transcription	Spleen	Spleen
14	chr6:36419000-36449200	Weak transcription	Pancreas	Pancrea
15	chr6:36423000-36449400	Weak transcription	Gastric	stomach
16	chr6:36423400-36449600	Weak transcription	Stomach Mucosa	stomach
17	chr6:36424800-36439200	Weak transcription	Left Ventricle	heart
18	chr6:36427600-36449200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr6:36428400-36439000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:36428600-36439400	Weak transcription	Psoas Muscle	Psoas
21	chr6:36428600-36445800	Weak transcription	Aorta	Aorta
22	chr6:36428800-36442000	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:36428800-36456600	Weak transcription	Right Atrium	heart
24	chr6:36429000-36439200	Weak transcription	HSMMtube	muscle
25	chr6:36429800-36439200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr6:36429800-36449200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr6:36430000-36444600	Weak transcription	Fetal Heart	heart
28	chr6:36430000-36446000	Weak transcription	HUVEC	blood vessel
29	chr6:36430400-36439000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr6:36430400-36439000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr6:36430800-36488800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:36431200-36453600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr6:36431600-36439800	Weak transcription	NHEK	skin
34	chr6:36431600-36447600	Weak transcription	Brain Angular Gyrus	brain
35	chr6:36431600-36449000	Weak transcription	Small Intestine	intestine
36	chr6:36431600-36449200	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr6:36431800-36449000	Weak transcription	A549	lung
38	chr6:36432000-36446800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr6:36432400-36439200	Weak transcription	NH-A	brain
40	chr6:36432400-36449000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr6:36432400-36449200	Weak transcription	NHDF-Ad	bronchial
42	chr6:36432600-36439200	Weak transcription	K562	blood
43	chr6:36432600-36439400	Weak transcription	Brain Germinal Matrix	brain
44	chr6:36432800-36439200	Weak transcription	Brain Hippocampus Middle	brain
45	chr6:36433800-36449200	Weak transcription	NHLF	lung
46	chr6:36436200-36439000	Weak transcription	Colonic Mucosa	Colon
47	chr6:36436400-36441800	Strong transcription	HSMM	muscle
48	chr6:36436400-36448800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr6:36436800-36452400	Weak transcription	Fetal Brain Male	brain
50	chr6:36437000-36450400	Strong transcription	Dnd41	blood

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