Variant report

Variant	rs536563
Chromosome Location	chr6:36388099-36388100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36386192..36388586-chr6:36389623..36392544,5	K562	blood:
2	chr6:36351929..36354847-chr6:36386125..36388786,2	MCF-7	breast:
3	chr6:36164113..36166132-chr6:36386693..36388231,2	K562	blood:
4	chr6:36386647..36388382-chr6:36410024..36412476,2	MCF-7	breast:
5	chr6:36386467..36388815-chr6:36389066..36391918,3	MCF-7	breast:
6	chr6:36386896..36388748-chr6:36409208..36410875,2	MCF-7	breast:
7	chr6:36388047..36404187-chr6:36407090..36418492,47	K562	blood:
8	chr6:36387051..36388586-chr6:36389623..36391841,2	K562	blood:
9	chr6:36379225..36383506-chr6:36385017..36389096,5	K562	blood:
10	chr6:36385781..36389716-chr6:36561820..36563529,3	MCF-7	breast:
11	chr6:36386854..36389830-chr6:36585117..36586872,2	MCF-7	breast:
12	chr6:36307342..36310235-chr6:36387767..36390340,2	K562	blood:
13	chr6:36379225..36382652-chr6:36387378..36390087,3	K562	blood:
14	chr6:36384943..36388342-chr6:36562138..36564282,3	K562	blood:
15	chr6:36386375..36388666-chr6:36396163..36398250,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000096070	Chromatin interaction
ENSG00000179165	Chromatin interaction
ENSG00000224666	Chromatin interaction
ENSG00000112081	Chromatin interaction
ENSG00000112078	Chromatin interaction
ENSG00000246982	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1322647	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28655492	1.00[AMR][1000 genomes]
rs57069130	1.00[AMR][1000 genomes]
rs57305886	1.00[AMR][1000 genomes]
rs57882234	1.00[AMR][1000 genomes]
rs58860412	1.00[AMR][1000 genomes]
rs601606	1.00[AFR][1000 genomes]
rs60233032	1.00[AMR][1000 genomes]
rs60493278	1.00[AMR][1000 genomes]
rs60908479	1.00[AMR][1000 genomes]
rs615402	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs632643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6901597	1.00[AMR][1000 genomes]
rs6902434	1.00[AMR][1000 genomes]
rs9368932	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36382800-36390200	Weak transcription	Fetal Intestine Small	intestine
2	chr6:36382800-36390600	Weak transcription	HUVEC	blood vessel
3	chr6:36386000-36388200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:36386000-36388400	Enhancers	Hela-S3	cervix
5	chr6:36386600-36388200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:36386600-36390000	Weak transcription	Pancreas	Pancrea
7	chr6:36386600-36390400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:36386600-36390600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:36386600-36390600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:36386800-36388400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr6:36386800-36390600	Weak transcription	Placenta	Placenta
12	chr6:36386800-36390800	Weak transcription	Esophagus	oesophagus
13	chr6:36386800-36391200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:36387000-36390600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:36387800-36390000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:36387800-36390200	Weak transcription	NHEK	skin
17	chr6:36387800-36390400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:36387800-36390400	Weak transcription	HMEC	breast
19	chr6:36388000-36390400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr6:36388000-36390600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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