Variant report

Variant	rs601606
Chromosome Location	chr6:36386550-36386551
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36386192..36388586-chr6:36389623..36392544,5	K562	blood:
2	chr6:36351929..36354847-chr6:36386125..36388786,2	MCF-7	breast:
3	chr6:36386467..36388815-chr6:36389066..36391918,3	MCF-7	breast:
4	chr6:36379225..36383506-chr6:36385017..36389096,5	K562	blood:
5	chr6:36385781..36389716-chr6:36561820..36563529,3	MCF-7	breast:
6	chr6:36384824..36387728-chr6:36409313..36412170,3	K562	blood:
7	chr6:36384943..36388342-chr6:36562138..36564282,3	K562	blood:
8	chr6:36386375..36388666-chr6:36396163..36398250,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000179165	Chromatin interaction
ENSG00000112078	Chromatin interaction
ENSG00000112081	Chromatin interaction
ENSG00000224666	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1322647	0.92[YRI][hapmap];0.88[AFR][1000 genomes]
rs2234063	1.00[AMR][1000 genomes]
rs536563	1.00[AFR][1000 genomes]
rs60729863	1.00[AMR][1000 genomes]
rs60738787	1.00[AMR][1000 genomes]
rs615402	0.91[AFR][1000 genomes]
rs61634749	1.00[AMR][1000 genomes]
rs632643	0.93[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36382800-36390200	Weak transcription	Fetal Intestine Small	intestine
2	chr6:36382800-36390600	Weak transcription	HUVEC	blood vessel
3	chr6:36386000-36388200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:36386000-36388400	Enhancers	Hela-S3	cervix
5	chr6:36386200-36386600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:36386200-36386600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:36386200-36387000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:36386200-36387800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:36386200-36387800	Enhancers	HMEC	breast
10	chr6:36386200-36387800	Enhancers	NHEK	skin
11	chr6:36386200-36388000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:36386400-36386600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:36386400-36386800	Enhancers	Esophagus	oesophagus
14	chr6:36386400-36386800	Enhancers	Placenta	Placenta
15	chr6:36386400-36386800	Bivalent Enhancer	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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