Variant report

Variant	rs61634749
Chromosome Location	chr6:36351981-36351982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr6:36351817-36352212	MCF-7	breast:	n/a	chr6:36352063-36352074
2	CEBPB	chr6:36351902-36352233	HepG2	liver:	n/a	chr6:36352063-36352074
3	CEBPB	chr6:36351912-36352199	Hela-S3	cervix:	n/a	chr6:36352063-36352074
4	CEBPB	chr6:36351938-36352140	HepG2	liver:	n/a	chr6:36352063-36352074
5	CEBPB	chr6:36351883-36352231	K562	blood:	n/a	chr6:36352063-36352074
6	CEBPB	chr6:36351884-36352231	K562	blood:	n/a	chr6:36352063-36352074

No.	Distal block	Cell Line	Cell type
1	chr6:36350662..36353563-chr6:36353746..36355330,2	K562	blood:
2	chr6:36323097..36324990-chr6:36349232..36352025,2	MCF-7	breast:
3	chr6:36350329..36353263-chr6:36561816..36565037,3	MCF-7	breast:
4	chr6:36350010..36352729-chr6:36563870..36566788,2	MCF-7	breast:
5	chr6:36350275..36352895-chr6:36574833..36577389,2	MCF-7	breast:
6	chr6:36350050..36352863-chr6:36645939..36648459,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224666	TF binding region
ENSG00000224666	Chromatin interaction
ENSG00000112081	Chromatin interaction
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2234063	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs601606	1.00[AMR][1000 genomes]
rs60729863	1.00[AMR][1000 genomes]
rs60738787	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428481	chr6:36219000-36365746	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36326800-36354000	Weak transcription	Small Intestine	intestine
2	chr6:36327000-36354000	Weak transcription	Right Atrium	heart
3	chr6:36328400-36353400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:36328800-36353600	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:36333200-36353800	Weak transcription	Pancreas	Pancrea
6	chr6:36333800-36353600	Weak transcription	Stomach Mucosa	stomach
7	chr6:36339200-36354200	Weak transcription	Esophagus	oesophagus
8	chr6:36339800-36353600	Weak transcription	Lung	lung
9	chr6:36344200-36354000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:36349800-36352000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:36350400-36352000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr6:36350600-36352200	Strong transcription	Fetal Intestine Small	intestine
13	chr6:36350600-36353600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:36351000-36352000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:36351200-36352000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:36351200-36352200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:36351200-36352200	Enhancers	GM12878-XiMat	blood
18	chr6:36351200-36353800	Weak transcription	Aorta	Aorta
19	chr6:36351200-36354200	Weak transcription	Spleen	Spleen
20	chr6:36351400-36352200	Enhancers	A549	lung
21	chr6:36351400-36353200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:36351400-36353600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr6:36351400-36353800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:36351600-36352200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:36351800-36352000	Enhancers	H9 Cell Line	embryonic stem cell
26	chr6:36351800-36352000	Enhancers	Primary T cells fromperipheralblood	blood
27	chr6:36351800-36352000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:36351800-36354000	Weak transcription	NHEK	skin

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