Variant report

Variant	rs632643
Chromosome Location	chr6:36391328-36391329
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:31)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:31 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36389834..36391684-chr6:36567056..36568861,2	K562	blood:
2	chr6:36391101..36392924-chr6:36399444..36401208,2	MCF-7	breast:
3	chr6:36386192..36388586-chr6:36389623..36392544,5	K562	blood:
4	chr6:36388375..36397373-chr6:36559893..36568556,25	K562	blood:
5	chr19:1020621..1021206-chr6:36391010..36391620,2	Hela-S3	cervix:
6	chr6:36389876..36393968-chr6:36394401..36398329,5	MCF-7	breast:
7	chr6:36390597..36391521-chr6:36411302..36412518,4	K562	blood:
8	chr6:36377091..36379278-chr6:36389922..36392675,3	K562	blood:
9	chr6:35995587..35997130-chr6:36391076..36392655,2	K562	blood:
10	chr6:36383284..36386089-chr6:36390453..36392882,2	K562	blood:
11	chr6:36389540..36391861-chr6:36455573..36458214,2	K562	blood:
12	chr6:36206019..36207605-chr6:36389629..36391661,2	K562	blood:
13	chr6:36389800..36393846-chr6:36407559..36413586,10	MCF-7	breast:
14	chr6:36390904..36392727-chr6:36403071..36404600,2	MCF-7	breast:
15	chr6:36390618..36391512-chr6:156873069..156873607,2	MCF-7	breast:
16	chr6:36382930..36386089-chr6:36390051..36393397,5	K562	blood:
17	chr6:36388047..36404187-chr6:36407090..36418492,47	K562	blood:
18	chr6:36391203..36392902-chr6:36402055..36405200,3	K562	blood:
19	chr6:36386467..36388815-chr6:36389066..36391918,3	MCF-7	breast:
20	chr6:36389826..36395258-chr6:36409228..36414565,11	MCF-7	breast:
21	chr6:36389514..36391373-chr6:36570790..36573256,2	K562	blood:
22	chr6:36084210..36086558-chr6:36391180..36393773,2	K562	blood:
23	chr6:36354194..36357304-chr6:36389625..36391809,3	MCF-7	breast:
24	chr6:36387051..36388586-chr6:36389623..36391841,2	K562	blood:
25	chr6:36388539..36397962-chr6:36560062..36566089,23	K562	blood:
26	chr6:36390093..36392459-chr6:36560084..36563405,4	MCF-7	breast:
27	chr6:36390037..36391654-chr6:36397187..36400029,2	K562	blood:
28	chr6:36389979..36392367-chr6:36513039..36514826,2	MCF-7	breast:
29	chr21:34601925..34602678-chr6:36390902..36391543,2	Hela-S3	cervix:
30	chr6:36388941..36391897-chr6:36513607..36515453,2	K562	blood:
31	chr6:36389566..36392929-chr6:36393759..36397072,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000224666	Chromatin interaction
ENSG00000112078	Chromatin interaction
ENSG00000112081	Chromatin interaction
ENSG00000182087	Chromatin interaction
ENSG00000112062	Chromatin interaction
ENSG00000112079	Chromatin interaction
ENSG00000010030	Chromatin interaction
ENSG00000179165	Chromatin interaction
ENSG00000159110	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1322647	0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28655492	1.00[AMR][1000 genomes]
rs536563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57069130	1.00[AMR][1000 genomes]
rs57305886	1.00[AMR][1000 genomes]
rs57882234	1.00[AMR][1000 genomes]
rs58860412	1.00[AMR][1000 genomes]
rs601606	0.93[YRI][hapmap];1.00[AFR][1000 genomes]
rs60233032	1.00[AMR][1000 genomes]
rs60493278	1.00[AMR][1000 genomes]
rs60908479	1.00[AMR][1000 genomes]
rs615402	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6901597	1.00[AMR][1000 genomes]
rs6902434	1.00[AMR][1000 genomes]
rs9368932	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36390200-36392000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:36390400-36391800	Active TSS	Psoas Muscle	Psoas
3	chr6:36390400-36392200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr6:36390600-36391400	Active TSS	H1 Cell Line	embryonic stem cell
5	chr6:36390600-36391400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:36390600-36391400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:36390600-36391400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:36390600-36391400	Active TSS	Thymus	Thymus
9	chr6:36390600-36391400	Active TSS	HSMM	muscle
10	chr6:36390600-36391400	Active TSS	HSMMtube	muscle
11	chr6:36390600-36391600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:36390600-36391600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:36390600-36391600	Active TSS	A549	lung
14	chr6:36390600-36391800	Active TSS	H9 Cell Line	embryonic stem cell
15	chr6:36390600-36391800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:36390600-36391800	Active TSS	Left Ventricle	heart
17	chr6:36390600-36391800	Active TSS	Ovary	ovary
18	chr6:36390600-36391800	Active TSS	Right Atrium	heart
19	chr6:36390600-36391800	Active TSS	Right Ventricle	heart
20	chr6:36390600-36391800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr6:36390600-36392000	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr6:36390600-36392000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr6:36390600-36392000	Active TSS	Aorta	Aorta
24	chr6:36390600-36392000	Active TSS	Brain Angular Gyrus	brain
25	chr6:36390600-36392000	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr6:36390600-36392000	Active TSS	Brain Substantia Nigra	brain
27	chr6:36390600-36392000	Active TSS	Fetal Muscle Trunk	muscle
28	chr6:36390600-36392000	Active TSS	Fetal Stomach	stomach
29	chr6:36390600-36392200	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr6:36390600-36392400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:36390600-36392600	Active TSS	Colonic Mucosa	Colon
32	chr6:36390800-36391400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:36390800-36391400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:36390800-36391400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:36390800-36391400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:36390800-36391400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
37	chr6:36390800-36391400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:36390800-36391400	Active TSS	Fetal Heart	heart
39	chr6:36390800-36391400	Active TSS	Fetal Lung	lung
40	chr6:36390800-36391400	Active TSS	Skeletal Muscle Female	skeletal muscle
41	chr6:36390800-36391400	Active TSS	GM12878-XiMat	blood
42	chr6:36390800-36391600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:36390800-36391600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:36390800-36391600	Active TSS	iPS-15b Cell Line	embryonic stem cell
45	chr6:36390800-36391600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr6:36390800-36391600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr6:36390800-36391600	Active TSS	Fetal Kidney	kidney
48	chr6:36390800-36391600	Active TSS	Small Intestine	intestine
49	chr6:36390800-36391800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
50	chr6:36390800-36391800	Active TSS	HUES64 Cell Line	embryonic stem cell

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