Variant report

Variant	rs59711763
Chromosome Location	chr14:36766245-36766246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:36759414..36761344-chr14:36764422..36766950,2	MCF-7	breast:
2	chr14:36764356..36766660-chr14:36769237..36771689,3	K562	blood:

Variant related genes	Relation type
ENSG00000151332	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10220683	1.00[EUR][1000 genomes]
rs17104271	0.90[AFR][1000 genomes]
rs17104280	0.80[AFR][1000 genomes]
rs17104295	0.85[AFR][1000 genomes]
rs28454088	1.00[EUR][1000 genomes]
rs3909603	0.90[AFR][1000 genomes]
rs59804868	1.00[EUR][1000 genomes]
rs59960391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60975260	1.00[EUR][1000 genomes]
rs61535449	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7142790	1.00[EUR][1000 genomes]
rs7148901	1.00[EUR][1000 genomes]
rs8004802	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8006305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8006989	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8017683	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8018390	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	esv3429093	chr14:36674701-36827119	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv3367425	chr14:36674721-36827089	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1042408	chr14:36693910-36810554	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv542043	chr14:36693910-36810554	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv34543	chr14:36736349-36772564	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv2751271	chr14:36745649-36782949	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv534143	chr14:36747497-36787893	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36761000-36785000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:36761400-36767000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr14:36761800-36766400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr14:36761800-36766600	Weak transcription	NH-A	brain
5	chr14:36762000-36770400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr14:36762000-36778800	Weak transcription	Fetal Intestine Small	intestine
7	chr14:36762200-36766800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr14:36762400-36766600	Weak transcription	A549	lung
9	chr14:36762600-36769800	Weak transcription	NHLF	lung
10	chr14:36762800-36766400	Weak transcription	Right Ventricle	heart
11	chr14:36763400-36769600	Weak transcription	Colon Smooth Muscle	Colon
12	chr14:36763800-36777800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr14:36764400-36766400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr14:36764400-36766400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr14:36764400-36766400	Weak transcription	HSMMtube	muscle
16	chr14:36764400-36766600	Weak transcription	Lung	lung
17	chr14:36764400-36784000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr14:36764600-36766400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr14:36764600-36766400	Weak transcription	Colonic Mucosa	Colon
20	chr14:36764600-36766400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr14:36764600-36767600	Weak transcription	Hela-S3	cervix
22	chr14:36764800-36767400	Strong transcription	Left Ventricle	heart
23	chr14:36764800-36768400	Strong transcription	Fetal Muscle Leg	muscle
24	chr14:36764800-36769000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr14:36764800-36769000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr14:36764800-36769600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr14:36764800-36770800	Strong transcription	Fetal Muscle Trunk	muscle
28	chr14:36765000-36766600	Weak transcription	Pancreas	Pancrea
29	chr14:36765000-36766800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr14:36765000-36769200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr14:36765000-36769400	Strong transcription	HepG2	liver
32	chr14:36765000-36779400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr14:36765000-36781200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr14:36765200-36768400	Strong transcription	Primary T cells from cord blood	blood
35	chr14:36765200-36769000	Strong transcription	HSMM	muscle
36	chr14:36765200-36781400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr14:36765400-36766600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr14:36765400-36767000	Weak transcription	NHEK	skin
39	chr14:36765400-36767400	Strong transcription	Aorta	Aorta
40	chr14:36765400-36767400	Strong transcription	Fetal Stomach	stomach
41	chr14:36765400-36767600	Strong transcription	Psoas Muscle	Psoas
42	chr14:36765400-36768400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr14:36765400-36768400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr14:36765400-36768400	Strong transcription	Ovary	ovary
45	chr14:36765400-36769000	Strong transcription	Primary hematopoietic stem cells	blood
46	chr14:36765400-36769000	Strong transcription	Brain Hippocampus Middle	brain
47	chr14:36765400-36771000	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr14:36765400-36773000	Strong transcription	Fetal Brain Female	brain
49	chr14:36765400-36775200	Strong transcription	Adipose Nuclei	Adipose
50	chr14:36765400-36781400	Strong transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links