Variant report

Variant	rs7142790
Chromosome Location	chr14:36767424-36767425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:36757907..36759500-chr14:36766689..36768870,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10220683	1.00[EUR][1000 genomes]
rs28454088	1.00[EUR][1000 genomes]
rs59711763	1.00[EUR][1000 genomes]
rs59804868	1.00[EUR][1000 genomes]
rs59960391	1.00[EUR][1000 genomes]
rs60975260	1.00[EUR][1000 genomes]
rs61535449	1.00[EUR][1000 genomes]
rs7148901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8004802	1.00[EUR][1000 genomes]
rs8006305	1.00[EUR][1000 genomes]
rs8006989	1.00[EUR][1000 genomes]
rs8017683	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	esv3429093	chr14:36674701-36827119	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv3367425	chr14:36674721-36827089	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1042408	chr14:36693910-36810554	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv542043	chr14:36693910-36810554	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	esv34543	chr14:36736349-36772564	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv2751271	chr14:36745649-36782949	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv534143	chr14:36747497-36787893	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36761000-36785000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:36762000-36770400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr14:36762000-36778800	Weak transcription	Fetal Intestine Small	intestine
4	chr14:36762600-36769800	Weak transcription	NHLF	lung
5	chr14:36763400-36769600	Weak transcription	Colon Smooth Muscle	Colon
6	chr14:36763800-36777800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr14:36764400-36784000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr14:36764600-36767600	Weak transcription	Hela-S3	cervix
9	chr14:36764800-36768400	Strong transcription	Fetal Muscle Leg	muscle
10	chr14:36764800-36769000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:36764800-36769000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:36764800-36769600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:36764800-36770800	Strong transcription	Fetal Muscle Trunk	muscle
14	chr14:36765000-36769200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:36765000-36769400	Strong transcription	HepG2	liver
16	chr14:36765000-36779400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr14:36765000-36781200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:36765200-36768400	Strong transcription	Primary T cells from cord blood	blood
19	chr14:36765200-36769000	Strong transcription	HSMM	muscle
20	chr14:36765200-36781400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr14:36765400-36767600	Strong transcription	Psoas Muscle	Psoas
22	chr14:36765400-36768400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:36765400-36768400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr14:36765400-36768400	Strong transcription	Ovary	ovary
25	chr14:36765400-36769000	Strong transcription	Primary hematopoietic stem cells	blood
26	chr14:36765400-36769000	Strong transcription	Brain Hippocampus Middle	brain
27	chr14:36765400-36771000	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr14:36765400-36773000	Strong transcription	Fetal Brain Female	brain
29	chr14:36765400-36775200	Strong transcription	Adipose Nuclei	Adipose
30	chr14:36765400-36781400	Strong transcription	Placenta	Placenta
31	chr14:36765400-36788800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr14:36765600-36767600	Strong transcription	Brain Cingulate Gyrus	brain
33	chr14:36765600-36767800	Strong transcription	Brain Angular Gyrus	brain
34	chr14:36765600-36768200	Strong transcription	Brain Substantia Nigra	brain
35	chr14:36765600-36768400	Strong transcription	Brain Germinal Matrix	brain
36	chr14:36765600-36768800	Strong transcription	HMEC	breast
37	chr14:36765600-36769200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr14:36765600-36770800	Strong transcription	Fetal Lung	lung
39	chr14:36765600-36781000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr14:36765800-36767600	Weak transcription	Dnd41	blood
41	chr14:36765800-36767800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr14:36765800-36767800	Strong transcription	Fetal Brain Male	brain
43	chr14:36765800-36769000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr14:36765800-36769000	Strong transcription	HUVEC	blood vessel
45	chr14:36765800-36769600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr14:36765800-36769600	Strong transcription	Osteobl	bone
47	chr14:36765800-36770000	Strong transcription	Liver	Liver
48	chr14:36765800-36770400	Strong transcription	Brain Anterior Caudate	brain
49	chr14:36765800-36771000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr14:36765800-36771000	Strong transcription	Fetal Intestine Large	intestine

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