Variant report

Variant	rs59713841
Chromosome Location	chr5:37113775-37113776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:37112874..37116886-chr5:37117758..37121364,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10038960	1.00[EUR][1000 genomes]
rs10072236	1.00[EUR][1000 genomes]
rs10079237	1.00[EUR][1000 genomes]
rs10214226	1.00[EUR][1000 genomes]
rs10440646	1.00[EUR][1000 genomes]
rs11949393	1.00[EUR][1000 genomes]
rs11949707	1.00[EUR][1000 genomes]
rs13356505	1.00[EUR][1000 genomes]
rs16903380	1.00[EUR][1000 genomes]
rs16903415	1.00[EUR][1000 genomes]
rs1833828	1.00[EUR][1000 genomes]
rs28429963	1.00[EUR][1000 genomes]
rs28609469	1.00[EUR][1000 genomes]
rs57061844	1.00[EUR][1000 genomes]
rs57402531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57591687	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58401892	0.90[AFR][1000 genomes]
rs58701977	1.00[EUR][1000 genomes]
rs60213369	1.00[EUR][1000 genomes]
rs60535592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60605472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6878453	1.00[EUR][1000 genomes]
rs6888095	1.00[EUR][1000 genomes]
rs7728794	1.00[EUR][1000 genomes]
rs9292650	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv530225	chr5:36886635-37331912	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1024051	chr5:36899712-37303001	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv537725	chr5:36899712-37303001	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	nsv917880	chr5:36948778-37115342	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	esv1802391	chr5:36958598-37242600	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv597822	chr5:36997953-37147152	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv534064	chr5:37054962-37586210	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
11	nsv881511	chr5:37088627-37552852	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
12	nsv597823	chr5:37111565-37430365	Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
13	nsv1026554	chr5:37112133-37734859	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
14	nsv537726	chr5:37112133-37734859	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37082800-37169200	Weak transcription	Spleen	Spleen
2	chr5:37101200-37115000	Weak transcription	A549	lung
3	chr5:37102200-37114400	Weak transcription	HMEC	breast
4	chr5:37102600-37115800	Strong transcription	HSMM	muscle
5	chr5:37102600-37121600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:37102800-37114200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:37103600-37115800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:37103600-37135400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:37103800-37143200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:37105200-37119000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:37105400-37114200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr5:37105400-37114800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr5:37105400-37120200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:37105400-37136400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:37105800-37156200	Weak transcription	NHLF	lung
16	chr5:37106000-37143400	Weak transcription	HepG2	liver
17	chr5:37106200-37150200	Weak transcription	NHEK	skin
18	chr5:37107000-37115400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr5:37107000-37122000	Strong transcription	Fetal Muscle Leg	muscle
20	chr5:37107000-37122600	Strong transcription	Fetal Muscle Trunk	muscle
21	chr5:37108200-37117800	Weak transcription	Esophagus	oesophagus
22	chr5:37108200-37143800	Weak transcription	Gastric	stomach
23	chr5:37108600-37117000	Weak transcription	Pancreas	Pancrea
24	chr5:37108600-37126400	Weak transcription	Lung	lung
25	chr5:37108600-37128200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr5:37108600-37139600	Weak transcription	Right Ventricle	heart
27	chr5:37109000-37114400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr5:37109200-37117800	Weak transcription	Colonic Mucosa	Colon
29	chr5:37109400-37113800	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr5:37109400-37114200	Weak transcription	NHDF-Ad	bronchial
31	chr5:37109600-37136400	Weak transcription	Brain Angular Gyrus	brain
32	chr5:37109600-37137800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr5:37110000-37118600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:37110400-37125800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr5:37110800-37120400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr5:37111200-37115600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr5:37111400-37121800	Strong transcription	Stomach Smooth Muscle	stomach
38	chr5:37111400-37122200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr5:37111600-37113800	Strong transcription	Fetal Brain Male	brain
40	chr5:37111600-37115200	Strong transcription	Colon Smooth Muscle	Colon
41	chr5:37111600-37115400	Strong transcription	Hela-S3	cervix
42	chr5:37111600-37115600	Strong transcription	Liver	Liver
43	chr5:37111600-37115800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr5:37111600-37117800	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr5:37111800-37117000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr5:37111800-37122600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr5:37112000-37115400	Strong transcription	Placenta	Placenta
48	chr5:37112000-37115400	Strong transcription	Left Ventricle	heart
49	chr5:37112000-37115600	Strong transcription	Adipose Nuclei	Adipose
50	chr5:37112000-37115800	Strong transcription	Brain Anterior Caudate	brain

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