Variant report

Variant	rs5971499
Chromosome Location	chrX:29481497-29481498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1014721	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12832809	0.86[JPT][hapmap]
rs12862650	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs2006793	0.85[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2050063	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs2050064	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs2206338	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs2340372	0.81[JPT][hapmap]
rs4829167	0.87[JPT][hapmap]
rs4829188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs4829190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs4829197	0.85[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap]
rs5971494	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs5971495	0.85[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs5971496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5971497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5971500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5971515	0.84[JPT][hapmap]
rs5971517	0.95[CEU][hapmap];0.81[CHB][hapmap]
rs5972100	0.81[JPT][hapmap]
rs5972128	0.80[CEU][hapmap]
rs5972176	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap]
rs5972179	0.85[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs5972233	0.95[CEU][hapmap];0.81[CHB][hapmap]
rs5972234	0.95[CEU][hapmap];0.81[CHB][hapmap]
rs5972236	0.82[JPT][hapmap]
rs5972238	0.95[CEU][hapmap];0.87[CHB][hapmap]
rs5972241	0.95[CEU][hapmap];0.81[CHB][hapmap]
rs6526854	0.86[JPT][hapmap]
rs6526862	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs6526863	0.85[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs6526869	0.86[CEU][hapmap];0.80[CHB][hapmap]
rs6526871	0.95[CEU][hapmap];0.81[CHB][hapmap]
rs6628425	0.80[CEU][hapmap]
rs6628428	0.80[CEU][hapmap]
rs6628429	0.80[CEU][hapmap]
rs6630859	0.81[JPT][hapmap]
rs6630860	0.81[CEU][hapmap]
rs6630862	0.87[JPT][hapmap]
rs7063024	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap]
rs7063105	0.82[CEU][hapmap];0.80[CHB][hapmap]
rs7065566	0.81[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs7065783	0.81[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs7066818	0.86[CEU][hapmap];0.80[CHB][hapmap]
rs715328	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432292	chrX:29109744-29845461	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv531754	chrX:29147023-29533186	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv531766	chrX:29225499-29928832	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948944	chrX:29398264-29902917	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv869450	chrX:29433295-29940875	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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