Variant report

Variant	rs5972179
Chromosome Location	chrX:29478436-29478437
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1014721	0.85[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs12832809	0.80[CEU][hapmap]
rs12862650	0.85[CEU][hapmap];0.81[CHB][hapmap];0.83[TSI][hapmap]
rs2006793	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs2050063	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs2050064	0.85[CEU][hapmap];0.81[CHB][hapmap];0.83[TSI][hapmap]
rs2206338	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4829167	0.80[CEU][hapmap]
rs4829188	0.85[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs4829190	0.85[CEU][hapmap];0.93[CHB][hapmap];0.81[CHD][hapmap];0.93[JPT][hapmap];0.88[TSI][hapmap]
rs4829197	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs5971494	0.85[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];0.85[TSI][hapmap]
rs5971495	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap]
rs5971496	0.85[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs5971497	0.85[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs5971499	0.85[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs5971500	0.85[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs5971515	0.90[CEU][hapmap];0.83[CHB][hapmap]
rs5971516	0.90[CEU][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];0.94[TSI][hapmap]
rs5971517	0.80[CEU][hapmap]
rs5972100	0.80[CEU][hapmap]
rs5972125	0.80[CEU][hapmap]
rs5972176	0.85[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap]
rs5972233	0.80[CEU][hapmap]
rs5972236	0.89[CEU][hapmap];0.85[CHB][hapmap]
rs5972238	0.80[CEU][hapmap];0.80[CHB][hapmap]
rs5972241	0.82[TSI][hapmap]
rs5973811	0.80[CEU][hapmap]
rs6526862	0.85[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs6526863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap]
rs6526869	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs6630859	0.80[CEU][hapmap]
rs6630862	0.80[CEU][hapmap]
rs7063024	0.84[CEU][hapmap];0.93[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.85[TSI][hapmap]
rs7063105	0.95[CEU][hapmap];0.86[CHB][hapmap]
rs7065566	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap]
rs7065783	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.92[GIH][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap]
rs7066818	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs715328	0.85[CEU][hapmap];0.93[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.85[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432292	chrX:29109744-29845461	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv531754	chrX:29147023-29533186	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv531766	chrX:29225499-29928832	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948944	chrX:29398264-29902917	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv869450	chrX:29433295-29940875	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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