Variant report

Variant	rs5972125
Chromosome Location	chrX:29466132-29466133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1014723	0.91[CHB][hapmap];0.86[CHD][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs1014724	0.91[CHB][hapmap];0.86[CHD][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap]
rs12559505	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs12832809	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.92[JPT][hapmap];0.97[TSI][hapmap]
rs1883446	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1983591	0.91[CHB][hapmap]
rs2006793	0.81[ASW][hapmap];0.80[CEU][hapmap]
rs2143169	0.89[CHB][hapmap];0.91[CHD][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap]
rs2206335	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap]
rs2206336	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2206338	0.80[CEU][hapmap]
rs2340372	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2879753	1.00[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap]
rs4829167	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs4829197	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs4829401	0.91[CHB][hapmap];0.91[CHD][hapmap];0.91[TSI][hapmap]
rs5927469	0.91[CHB][hapmap];0.87[TSI][hapmap]
rs5927483	1.00[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.94[MEX][hapmap];0.91[TSI][hapmap]
rs5928926	0.85[CEU][hapmap];0.91[CHB][hapmap]
rs5971494	0.85[JPT][hapmap]
rs5971495	0.80[CEU][hapmap]
rs5971515	0.84[CEU][hapmap]
rs5971516	0.81[ASW][hapmap]
rs5972037	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs5972082	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs5972100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5972128	0.85[CEU][hapmap];0.91[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs5972179	0.80[CEU][hapmap]
rs5972236	0.84[CEU][hapmap]
rs5973678	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.91[TSI][hapmap]
rs5973811	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6526854	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.91[TSI][hapmap]
rs6526862	0.85[JPT][hapmap]
rs6526863	0.80[CEU][hapmap]
rs6526869	0.80[CEU][hapmap]
rs6628425	0.85[CEU][hapmap];0.91[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap]
rs6628428	0.85[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs6628429	0.85[CEU][hapmap];0.91[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs6630859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6630860	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6630862	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs7065566	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs7065783	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs7066818	0.80[CEU][hapmap]
rs715328	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432292	chrX:29109744-29845461	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv531754	chrX:29147023-29533186	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv531766	chrX:29225499-29928832	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948944	chrX:29398264-29902917	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv869450	chrX:29433295-29940875	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:29464200-29468400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links