Variant report

Variant	rs12559505
Chromosome Location	chrX:29441313-29441314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1014723	0.80[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap]
rs1014724	0.91[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap]
rs1015928	0.80[JPT][hapmap]
rs1028361	0.80[JPT][hapmap]
rs11095149	0.90[JPT][hapmap]
rs12832809	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.94[TSI][hapmap]
rs17282598	0.80[JPT][hapmap]
rs17329372	0.90[JPT][hapmap]
rs17329386	0.80[JPT][hapmap]
rs1883446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1983590	0.91[JPT][hapmap]
rs1983591	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2143169	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs2206335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap]
rs2206336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2340372	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2879753	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs4829167	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs4829401	0.85[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs5926957	0.88[JPT][hapmap]
rs5927179	0.91[JPT][hapmap]
rs5927223	0.80[JPT][hapmap]
rs5927469	0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.97[TSI][hapmap]
rs5927483	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap]
rs5927617	0.80[JPT][hapmap]
rs5927671	0.90[JPT][hapmap]
rs5927700	0.89[JPT][hapmap]
rs5927858	0.90[JPT][hapmap]
rs5928345	0.91[JPT][hapmap]
rs5928926	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs5971905	0.80[JPT][hapmap]
rs5972037	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5972082	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs5972100	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs5972125	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs5972128	0.91[CHB][hapmap];0.84[MEX][hapmap]
rs5973678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs5973811	0.85[CEU][hapmap]
rs6526854	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap]
rs6628425	0.91[CHB][hapmap]
rs6628428	0.91[CHB][hapmap]
rs6628429	0.91[CHB][hapmap];0.83[MEX][hapmap]
rs6630859	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs6630860	0.91[CHB][hapmap]
rs6630862	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs726882	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432292	chrX:29109744-29845461	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv531754	chrX:29147023-29533186	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv531766	chrX:29225499-29928832	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv948944	chrX:29398264-29902917	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv869450	chrX:29433295-29940875	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:29438600-29445400	Weak transcription	Fetal Heart	heart
2	chrX:29440000-29441600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chrX:29440200-29441600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chrX:29440200-29441600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chrX:29440800-29441600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chrX:29441200-29441400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chrX:29441200-29442200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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