Variant report
| Variant | rs11095149 |
|---|---|
| Chromosome Location | chrX:29383118-29383119 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chrX:29381837..29383683-chrX:29401526..29403141,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1014723 | 0.90[JPT][hapmap] |
| rs1014724 | 0.90[JPT][hapmap] |
| rs1015928 | 0.86[CHB][hapmap];0.83[GIH][hapmap];0.89[JPT][hapmap] |
| rs12559505 | 0.90[JPT][hapmap] |
| rs17282598 | 1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[JPT][hapmap] |
| rs17329372 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs17329386 | 0.87[CHB][hapmap] |
| rs1883446 | 0.90[JPT][hapmap] |
| rs1983590 | 0.81[JPT][hapmap] |
| rs1983591 | 0.90[JPT][hapmap] |
| rs2143169 | 0.90[JPT][hapmap] |
| rs2206335 | 0.90[JPT][hapmap] |
| rs2206336 | 0.90[JPT][hapmap] |
| rs2879753 | 0.90[JPT][hapmap] |
| rs4829401 | 0.90[JPT][hapmap] |
| rs5926957 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs5927179 | 0.87[CHB][hapmap];0.81[JPT][hapmap] |
| rs5927469 | 0.81[JPT][hapmap] |
| rs5927483 | 0.88[JPT][hapmap] |
| rs5927617 | 1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[JPT][hapmap] |
| rs5927671 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap] |
| rs5927700 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs5927858 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs5928345 | 0.87[CHB][hapmap];0.81[JPT][hapmap] |
| rs5928926 | 0.90[JPT][hapmap] |
| rs5972037 | 0.90[JPT][hapmap] |
| rs5973678 | 0.90[JPT][hapmap] |
| rs726882 | 0.81[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432292 | chrX:29109744-29845461 | Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv531754 | chrX:29147023-29533186 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv531766 | chrX:29225499-29928832 | Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv521673 | chrX:29288649-29433354 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
