Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1014723	0.80[JPT][hapmap]
rs1014724	0.80[JPT][hapmap]
rs1015928	0.90[CEU][hapmap];0.86[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs1028361	0.80[JPT][hapmap]
rs11095149	1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[JPT][hapmap]
rs12559505	0.80[JPT][hapmap]
rs17282591	0.95[CEU][hapmap];0.90[TSI][hapmap]
rs17329372	0.89[JPT][hapmap]
rs17329386	0.87[CHB][hapmap];0.80[JPT][hapmap]
rs1883446	0.80[JPT][hapmap]
rs1983591	0.80[JPT][hapmap]
rs2064252	0.81[CEU][hapmap];0.97[TSI][hapmap]
rs2143169	0.80[JPT][hapmap]
rs2206335	0.80[JPT][hapmap]
rs2206336	0.80[JPT][hapmap]
rs2879753	0.80[JPT][hapmap]
rs4829401	0.80[JPT][hapmap]
rs5926957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs5927179	0.87[CHB][hapmap]
rs5927223	0.80[JPT][hapmap]
rs5927617	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs5927671	0.87[ASW][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap]
rs5927700	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs5927858	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs5928345	0.87[CHB][hapmap]
rs5928926	0.80[JPT][hapmap]
rs5971905	0.80[JPT][hapmap]
rs5972037	0.80[JPT][hapmap]
rs5972082	0.89[JPT][hapmap]
rs5973678	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516364	chrX:28898814-29374282	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv432292	chrX:29109744-29845461	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv531754	chrX:29147023-29533186	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv531766	chrX:29225499-29928832	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
5	nsv521673	chrX:29288649-29433354	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:29372800-29373800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chrX:29372800-29375800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chrX:29373400-29375600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search: