Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1014723	0.89[JPT][hapmap]
rs1014724	0.89[JPT][hapmap]
rs1015928	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs11095149	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12559505	0.89[JPT][hapmap]
rs17282598	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs17329372	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs17329386	0.87[CHB][hapmap]
rs1883446	0.91[JPT][hapmap]
rs1983591	0.91[JPT][hapmap]
rs2143169	0.89[JPT][hapmap]
rs2206335	0.89[JPT][hapmap]
rs2206336	0.91[JPT][hapmap]
rs2341288	0.83[CEU][hapmap]
rs2879753	0.89[JPT][hapmap]
rs4829401	0.89[JPT][hapmap]
rs5926957	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs5927179	0.87[CHB][hapmap]
rs5927483	0.87[JPT][hapmap]
rs5927617	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs5927671	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5927858	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5927887	0.83[CEU][hapmap]
rs5928345	0.87[CHB][hapmap]
rs5928926	0.91[JPT][hapmap]
rs5972037	0.91[JPT][hapmap]
rs5972082	0.81[JPT][hapmap]
rs5973678	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432292	chrX:29109744-29845461	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv531754	chrX:29147023-29533186	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv531766	chrX:29225499-29928832	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv521673	chrX:29288649-29433354	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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