Variant report

Variant	rs726882
Chromosome Location	chrX:29409620-29409621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1014723	0.91[JPT][hapmap]
rs1014724	0.91[JPT][hapmap]
rs1028361	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap]
rs11095149	0.81[JPT][hapmap]
rs12559505	0.91[JPT][hapmap]
rs17329372	0.81[JPT][hapmap]
rs17329386	0.91[JPT][hapmap]
rs1883446	0.91[JPT][hapmap]
rs1983590	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap]
rs1983591	0.91[JPT][hapmap]
rs2143169	0.91[JPT][hapmap]
rs2206335	0.91[JPT][hapmap]
rs2206336	0.91[JPT][hapmap]
rs2879753	0.91[JPT][hapmap]
rs4829401	0.91[JPT][hapmap]
rs5927179	1.00[JPT][hapmap]
rs5927223	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.91[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap]
rs5927469	0.81[JPT][hapmap]
rs5927483	0.89[JPT][hapmap]
rs5927671	0.81[JPT][hapmap]
rs5927858	0.81[JPT][hapmap]
rs5927887	0.80[LWK][hapmap]
rs5928345	1.00[JPT][hapmap]
rs5928926	0.91[JPT][hapmap]
rs5971905	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs5972037	0.91[JPT][hapmap]
rs5972082	0.81[JPT][hapmap]
rs5973678	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432292	chrX:29109744-29845461	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv531754	chrX:29147023-29533186	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv531766	chrX:29225499-29928832	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv521673	chrX:29288649-29433354	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv948944	chrX:29398264-29902917	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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