Variant report

Variant	rs59731251
Chromosome Location	chr2:113486219-113486220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr2:113485315-113486359	K562	blood:	n/a	n/a
2	IRF1	chr2:113486155-113486355	K562	blood:	n/a	n/a
3	CBX3	chr2:113485472-113486249	K562	blood:	n/a	n/a
4	GATA1	chr2:113485466-113486392	PBDE	blood:	n/a	chr2:113485738-113485754 chr2:113485743-113485750 chr2:113485743-113485750 chr2:113485738-113485754 chr2:113485741-113485751 chr2:113485743-113485750 chr2:113485736-113485757 chr2:113485741-113485750
5	JUND	chr2:113485558-113486244	K562	blood:	n/a	n/a
6	JUN	chr2:113484062-113486435	K562	blood:	n/a	n/a
7	CUX1	chr2:113486118-113486460	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr2:113338256..113339919-chr2:113484252..113486585,3	MCF-7	breast:
2	chr2:113401788..113407326-chr2:113480776..113487899,15	MCF-7	breast:
3	chr2:113297047..113302352-chr2:113483159..113487384,5	K562	blood:
4	chr2:113484246..113487026-chr2:113487818..113491393,4	MCF-7	breast:
5	chr2:113401171..113414378-chr2:113468812..113486672,46	K562	blood:
6	chr2:113415099..113418730-chr2:113484170..113487314,3	K562	blood:
7	chr2:113340008..113343992-chr2:113483304..113487579,6	K562	blood:
8	chr2:113482871..113484637-chr2:113485555..113488424,2	K562	blood:
9	chr2:113338959..113342918-chr2:113483353..113487579,5	K562	blood:
10	chr2:113485399..113487990-chr2:113522114..113523918,2	K562	blood:
11	chr2:113447408..113450068-chr2:113484150..113486328,2	MCF-7	breast:

Variant related genes	Relation type
NT5DC4	TF binding region
ENSG00000125611	Chromatin interaction
ENSG00000144136	Chromatin interaction
ENSG00000125630	Chromatin interaction
ENSG00000144130	Chromatin interaction
ENSG00000237753	Chromatin interaction
ENSG00000169607	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs36046436	0.95[AFR][1000 genomes]
rs3783564	0.85[AFR][1000 genomes]
rs3783587	0.85[AFR][1000 genomes]
rs58616713	0.95[AFR][1000 genomes]
rs60366269	0.85[AFR][1000 genomes]
rs60561321	0.85[AFR][1000 genomes]
rs6707053	0.85[AFR][1000 genomes]
rs6714649	0.95[AFR][1000 genomes]
rs6722548	0.95[AFR][1000 genomes]
rs6740867	0.85[AFR][1000 genomes]
rs6755922	0.95[AFR][1000 genomes]
rs6756171	0.95[AFR][1000 genomes]
rs6756392	0.95[AFR][1000 genomes]
rs72950356	0.95[AFR][1000 genomes]
rs72950390	0.85[AFR][1000 genomes]
rs72950392	0.95[AFR][1000 genomes]
rs72952107	0.95[AFR][1000 genomes]
rs72952126	0.95[AFR][1000 genomes]
rs72952131	0.85[AFR][1000 genomes]
rs72952187	0.80[AFR][1000 genomes]
rs7609207	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428724	chr2:113376894-113555421	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1010106	chr2:113394981-113556071	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv526301	chr2:113451498-113495785	Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113464200-113486400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr2:113477600-113487000	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr2:113478600-113488200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:113480000-113488200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr2:113481200-113487600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr2:113481800-113486600	Enhancers	Placenta	Placenta
7	chr2:113483000-113488200	Enhancers	Spleen	Spleen
8	chr2:113483600-113487600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:113483800-113488200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr2:113484000-113487400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr2:113484200-113497200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:113484400-113494200	Weak transcription	A549	lung
13	chr2:113484400-113494800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr2:113484400-113495000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr2:113484400-113495600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr2:113484400-113495600	Weak transcription	Thymus	Thymus
17	chr2:113484400-113495800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr2:113484400-113495800	Weak transcription	GM12878-XiMat	blood
19	chr2:113484400-113496400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:113484400-113507400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr2:113484600-113494200	Weak transcription	Fetal Thymus	thymus
22	chr2:113484600-113507600	Weak transcription	Colonic Mucosa	Colon
23	chr2:113484800-113486400	Weak transcription	Lung	lung
24	chr2:113484800-113490000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr2:113484800-113490400	Weak transcription	Fetal Brain Male	brain
26	chr2:113484800-113490400	Weak transcription	Fetal Intestine Large	intestine
27	chr2:113484800-113494400	Weak transcription	NHEK	skin
28	chr2:113484800-113494600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr2:113484800-113494800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr2:113484800-113495600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr2:113484800-113496200	Weak transcription	NHDF-Ad	bronchial
32	chr2:113484800-113507600	Weak transcription	Primary B cells from cord blood	blood
33	chr2:113485000-113494800	Weak transcription	Dnd41	blood
34	chr2:113485200-113486400	Flanking Active TSS	K562	blood
35	chr2:113485200-113494800	Weak transcription	HMEC	breast
36	chr2:113485400-113487600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr2:113485600-113486400	Bivalent Enhancer	Duodenum Mucosa	Duodenum
38	chr2:113485800-113486400	Enhancers	Fetal Heart	heart
39	chr2:113485800-113486400	Enhancers	Fetal Lung	lung
40	chr2:113485800-113486600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
41	chr2:113486000-113486400	Enhancers	HUVEC	blood vessel
42	chr2:113486000-113487000	Weak transcription	Primary hematopoietic stem cells	blood
43	chr2:113486000-113487200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr2:113486000-113491000	Weak transcription	Fetal Muscle Leg	muscle
45	chr2:113486200-113486400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
46	chr2:113486200-113486400	Enhancers	Hela-S3	cervix
47	chr2:113486200-113486400	Enhancers	NH-A	brain
48	chr2:113486200-113487400	Enhancers	Adipose Nuclei	Adipose
49	chr2:113486200-113494400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr2:113486200-113494600	Weak transcription	Fetal Stomach	stomach

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