Variant report

Variant	rs60366269
Chromosome Location	chr2:113551794-113551795
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:113533014..113535192-chr2:113549510..113553376,4	K562	blood:
2	chr2:113403478..113405250-chr2:113549720..113552295,2	K562	blood:
3	chr2:113542127..113543876-chr2:113551116..113552933,2	K562	blood:

Variant related genes	Relation type
ENSG00000144136	Chromatin interaction
ENSG00000115008	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs36046436	0.90[AFR][1000 genomes]
rs3783564	1.00[AFR][1000 genomes]
rs3783587	1.00[AFR][1000 genomes]
rs58616713	0.90[AFR][1000 genomes]
rs59731251	0.85[AFR][1000 genomes]
rs60561321	1.00[AFR][1000 genomes]
rs6542098	0.84[AFR][1000 genomes]
rs6707053	1.00[AFR][1000 genomes]
rs6714649	0.90[AFR][1000 genomes]
rs6722548	0.90[AFR][1000 genomes]
rs6728739	0.90[AFR][1000 genomes]
rs6740867	1.00[AFR][1000 genomes]
rs6755922	0.90[AFR][1000 genomes]
rs6756171	0.90[AFR][1000 genomes]
rs6756392	0.90[AFR][1000 genomes]
rs72950356	0.90[AFR][1000 genomes]
rs72950390	1.00[AFR][1000 genomes]
rs72950392	0.90[AFR][1000 genomes]
rs72952107	0.90[AFR][1000 genomes]
rs72952126	0.90[AFR][1000 genomes]
rs72952131	1.00[AFR][1000 genomes]
rs72952187	0.95[AFR][1000 genomes]
rs7609207	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428724	chr2:113376894-113555421	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1010106	chr2:113394981-113556071	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113534000-113551800	Weak transcription	Fetal Heart	heart
2	chr2:113542400-113559200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:113543000-113562200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:113545800-113552400	Weak transcription	Primary B cells from cord blood	blood
5	chr2:113547800-113551800	Weak transcription	Right Atrium	heart
6	chr2:113548000-113554800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:113548400-113553800	Enhancers	Placenta	Placenta
8	chr2:113548600-113554400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:113549200-113553800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr2:113549400-113552000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr2:113549400-113552400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:113549400-113552400	Weak transcription	Esophagus	oesophagus
13	chr2:113549400-113553200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:113549400-113555200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:113549800-113553200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr2:113550000-113552000	Enhancers	HepG2	liver
17	chr2:113550000-113552600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr2:113550400-113554400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr2:113550400-113554400	Enhancers	HMEC	breast
20	chr2:113550600-113552400	Enhancers	Hela-S3	cervix
21	chr2:113550600-113552800	Enhancers	HUVEC	blood vessel
22	chr2:113550600-113553800	Enhancers	Fetal Lung	lung
23	chr2:113550600-113554400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:113550600-113554400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr2:113550800-113552000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr2:113550800-113552200	Enhancers	A549	lung
27	chr2:113550800-113552800	Enhancers	Spleen	Spleen
28	chr2:113550800-113553000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr2:113550800-113553800	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr2:113550800-113554400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr2:113550800-113554400	Enhancers	Placenta Amnion	Placenta Amnion
32	chr2:113551000-113552400	Enhancers	Muscle Satellite Cultured Cells	--
33	chr2:113551000-113552800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr2:113551000-113552800	Enhancers	Adipose Nuclei	Adipose
35	chr2:113551200-113552000	Flanking Active TSS	GM12878-XiMat	blood
36	chr2:113551200-113552600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr2:113551200-113552800	Enhancers	Osteobl	bone
38	chr2:113551200-113553400	Enhancers	Fetal Intestine Small	intestine
39	chr2:113551400-113551800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr2:113551400-113552400	Weak transcription	Stomach Mucosa	stomach
41	chr2:113551400-113552600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr2:113551400-113552600	Enhancers	NHLF	lung
43	chr2:113551600-113551800	Flanking Active TSS	NHEK	skin
44	chr2:113551600-113552000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
45	chr2:113551600-113552000	Enhancers	Liver	Liver
46	chr2:113551600-113552600	Enhancers	NHDF-Ad	bronchial
47	chr2:113551600-113552800	Flanking Active TSS	K562	blood
48	chr2:113551600-113553800	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links