Variant report

Variant	rs597353
Chromosome Location	chr6:36513976-36513977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36511832..36520020-chr6:36560637..36566762,23	K562	blood:
2	chr6:36511392..36518322-chr6:36560440..36567216,21	MCF-7	breast:
3	chr6:36408851..36410684-chr6:36512554..36515336,3	K562	blood:
4	chr6:36511879..36517279-chr6:36558264..36566013,19	MCF-7	breast:
5	chr6:36409184..36410963-chr6:36513836..36516900,3	K562	blood:
6	chr6:36513256..36514925-chr6:36570218..36572859,3	K562	blood:
7	chr6:36513370..36515088-chr6:36555840..36557941,2	MCF-7	breast:
8	chr6:36389979..36392367-chr6:36513039..36514826,2	MCF-7	breast:
9	chr6:36512892..36514638-chr6:36529492..36532475,2	K562	blood:
10	chr6:36510007..36526277-chr6:36558145..36566762,35	K562	blood:
11	chr6:36409344..36412329-chr6:36513269..36516052,4	MCF-7	breast:
12	chr6:36513256..36515069-chr6:36571359..36573828,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction
ENSG00000112078	Chromatin interaction
ENSG00000179165	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1233079	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs586036	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs588566	1.00[YRI][hapmap]
rs605595	1.00[YRI][hapmap]
rs606544	1.00[YRI][hapmap]
rs606626	1.00[YRI][hapmap]
rs612988	1.00[AFR][1000 genomes]
rs629130	1.00[AFR][1000 genomes]
rs657238	1.00[YRI][hapmap]
rs666757	1.00[AFR][1000 genomes]
rs668606	0.86[AFR][1000 genomes]
rs673530	1.00[YRI][hapmap]
rs674047	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
2	nsv5260	chr6:36471464-36516119	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36478400-36514000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:36479600-36514400	Weak transcription	Spleen	Spleen
3	chr6:36484600-36514000	Weak transcription	Pancreas	Pancrea
4	chr6:36492400-36514000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:36496200-36514200	Weak transcription	Gastric	stomach
6	chr6:36500000-36514000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:36509000-36514000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:36510600-36514200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr6:36511200-36514200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr6:36511600-36514800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:36512400-36514000	Weak transcription	Ovary	ovary
12	chr6:36512600-36514000	Weak transcription	Esophagus	oesophagus
13	chr6:36512600-36515400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:36512600-36515600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:36512800-36514000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:36512800-36514000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:36512800-36514200	Flanking Active TSS	Dnd41	blood
18	chr6:36512800-36515200	Active TSS	Primary T cells from cord blood	blood
19	chr6:36512800-36515400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:36512800-36515400	Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr6:36512800-36515400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr6:36512800-36515400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
23	chr6:36512800-36515400	Active TSS	NHLF	lung
24	chr6:36512800-36515600	Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr6:36513000-36514000	Weak transcription	Lung	lung
26	chr6:36513000-36514200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:36513000-36514400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:36513000-36514800	Flanking Active TSS	Primary hematopoietic stem cells	blood
29	chr6:36513000-36515400	Active TSS	Primary T cells fromperipheralblood	blood
30	chr6:36513000-36515400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:36513000-36515600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
32	chr6:36513200-36514000	Flanking Active TSS	Colon Smooth Muscle	Colon
33	chr6:36513200-36514200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
34	chr6:36513200-36514200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:36513200-36515400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:36513200-36515400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
37	chr6:36513200-36515400	Active TSS	GM12878-XiMat	blood
38	chr6:36513400-36514000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:36513400-36514000	Flanking Active TSS	Brain Germinal Matrix	brain
40	chr6:36513400-36514000	Flanking Active TSS	Fetal Heart	heart
41	chr6:36513400-36514000	Flanking Active TSS	Fetal Intestine Small	intestine
42	chr6:36513400-36514000	Flanking Active TSS	Hela-S3	cervix
43	chr6:36513400-36514200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr6:36513400-36514200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr6:36513400-36514200	Flanking Active TSS	Primary B cells from peripheral blood	blood
46	chr6:36513400-36514200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:36513400-36514200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:36513400-36514200	Flanking Active TSS	Rectal Smooth Muscle	rectum
49	chr6:36513400-36514200	Flanking Active TSS	HUVEC	blood vessel
50	chr6:36513400-36514200	Flanking Active TSS	K562	blood

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