Variant report

Variant	rs59738022
Chromosome Location	chr7:84660625-84660626
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17148268	0.91[AFR][1000 genomes]
rs17148271	0.91[AFR][1000 genomes]
rs17159502	0.91[AFR][1000 genomes]
rs17159580	0.95[AFR][1000 genomes]
rs17159589	0.86[AFR][1000 genomes]
rs17159590	0.86[AFR][1000 genomes]
rs17159596	0.86[AFR][1000 genomes]
rs17159599	0.82[AFR][1000 genomes]
rs17159607	0.82[AFR][1000 genomes]
rs57948301	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84644600-84662600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:84655000-84661000	Weak transcription	Aorta	Aorta
3	chr7:84655000-84673600	Weak transcription	Fetal Brain Male	brain
4	chr7:84655600-84666000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:84655600-84667800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:84656200-84694800	Weak transcription	Fetal Stomach	stomach
7	chr7:84660400-84660800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr7:84660400-84660800	Enhancers	NH-A	brain
9	chr7:84660400-84661000	Enhancers	Fetal Heart	heart
10	chr7:84660400-84661800	Enhancers	Fetal Lung	lung
11	chr7:84660600-84671200	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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