Variant report

Variant	rs17159607
Chromosome Location	chr7:84706625-84706626
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10216037	1.00[AMR][1000 genomes]
rs10224192	1.00[AMR][1000 genomes]
rs10227790	1.00[AMR][1000 genomes]
rs10229726	1.00[AMR][1000 genomes]
rs10230012	1.00[AMR][1000 genomes]
rs10230209	1.00[AMR][1000 genomes]
rs10231169	1.00[AMR][1000 genomes]
rs10234337	1.00[AMR][1000 genomes]
rs10235044	1.00[AMR][1000 genomes]
rs10235804	1.00[AMR][1000 genomes]
rs10238552	1.00[AMR][1000 genomes]
rs10238803	1.00[AMR][1000 genomes]
rs10241357	1.00[AMR][1000 genomes]
rs10242005	1.00[AMR][1000 genomes]
rs10242855	1.00[AMR][1000 genomes]
rs10243021	1.00[AMR][1000 genomes]
rs10243828	1.00[AMR][1000 genomes]
rs10247729	1.00[AMR][1000 genomes]
rs10248781	1.00[AMR][1000 genomes]
rs10249004	1.00[AMR][1000 genomes]
rs10252528	1.00[AMR][1000 genomes]
rs10253650	1.00[AMR][1000 genomes]
rs10254645	1.00[AMR][1000 genomes]
rs10254905	1.00[AMR][1000 genomes]
rs10256352	1.00[AMR][1000 genomes]
rs10256709	1.00[AMR][1000 genomes]
rs10256725	1.00[AMR][1000 genomes]
rs10256947	1.00[AMR][1000 genomes]
rs10257324	1.00[AMR][1000 genomes]
rs10258219	1.00[AMR][1000 genomes]
rs10258244	1.00[AMR][1000 genomes]
rs10264103	1.00[AMR][1000 genomes]
rs10273523	1.00[AMR][1000 genomes]
rs10273534	1.00[AMR][1000 genomes]
rs10273650	1.00[AMR][1000 genomes]
rs10275794	1.00[AMR][1000 genomes]
rs10277419	1.00[AMR][1000 genomes]
rs10282093	1.00[AMR][1000 genomes]
rs12334236	1.00[AMR][1000 genomes]
rs1430595	1.00[AMR][1000 genomes]
rs17148268	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17148271	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159502	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159553	1.00[AMR][1000 genomes]
rs17159580	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159589	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159590	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159596	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159599	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17159609	1.00[AMR][1000 genomes]
rs1830384	1.00[AMR][1000 genomes]
rs1830385	1.00[AMR][1000 genomes]
rs1830386	1.00[AMR][1000 genomes]
rs1835404	1.00[AMR][1000 genomes]
rs1919288	1.00[AMR][1000 genomes]
rs1919289	1.00[AMR][1000 genomes]
rs2178116	1.00[AMR][1000 genomes]
rs28366993	1.00[AMR][1000 genomes]
rs28379695	1.00[AMR][1000 genomes]
rs28395450	1.00[AMR][1000 genomes]
rs28412718	1.00[AMR][1000 genomes]
rs28428821	1.00[AMR][1000 genomes]
rs28450350	1.00[AMR][1000 genomes]
rs28451585	1.00[AMR][1000 genomes]
rs28503172	1.00[AMR][1000 genomes]
rs28576399	1.00[AMR][1000 genomes]
rs28610512	1.00[AMR][1000 genomes]
rs28618178	1.00[AMR][1000 genomes]
rs28648964	1.00[AMR][1000 genomes]
rs28715185	1.00[AMR][1000 genomes]
rs41518350	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4398846	1.00[AMR][1000 genomes]
rs57698546	1.00[AMR][1000 genomes]
rs57948301	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58279956	1.00[AMR][1000 genomes]
rs59738022	0.82[AFR][1000 genomes]
rs9655926	1.00[AMR][1000 genomes]
rs9655927	1.00[AMR][1000 genomes]
rs9886001	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv916645	chr7:84678606-85420011	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv869255	chr7:84678606-85444155	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1032610	chr7:84683282-84725413	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv1034620	chr7:84701267-84791576	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv519125	chr7:84704447-84795710	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84696000-84717600	Weak transcription	Fetal Stomach	stomach
2	chr7:84701200-84715400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:84701400-84709800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:84701800-84707200	Weak transcription	Fetal Lung	lung
5	chr7:84705200-84707000	Weak transcription	Fetal Kidney	kidney

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