Variant report

Variant	rs12334236
Chromosome Location	chr7:84536652-84536653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10085820	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10216037	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10224192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10225298	0.81[AFR][1000 genomes]
rs10225557	0.81[AFR][1000 genomes]
rs10226288	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10226313	1.00[AMR][1000 genomes]
rs10227472	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10227790	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229365	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229476	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229726	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10230012	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10230209	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231169	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231227	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234337	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234993	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235044	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10238552	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10238803	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10239054	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241357	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242005	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243021	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243755	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243828	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243859	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10244922	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10247729	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248205	1.00[YRI][hapmap]
rs10248781	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249004	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10250111	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252528	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252836	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253565	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253650	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254493	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254645	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254905	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256352	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256709	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256725	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256947	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10257078	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10257324	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258219	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258244	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260523	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10264103	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10264147	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268505	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10269671	1.00[AMR][1000 genomes]
rs10271353	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271605	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273523	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273534	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273650	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275794	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276443	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279991	1.00[AMR][1000 genomes]
rs10282093	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13438389	0.82[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1430595	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17148268	1.00[AMR][1000 genomes]
rs17148271	1.00[AMR][1000 genomes]
rs17159502	1.00[AMR][1000 genomes]
rs17159553	1.00[AMR][1000 genomes]
rs17159580	1.00[AMR][1000 genomes]
rs17159589	1.00[AMR][1000 genomes]
rs17159590	1.00[AMR][1000 genomes]
rs17159596	1.00[AMR][1000 genomes]
rs17159599	1.00[AMR][1000 genomes]
rs17159607	1.00[AMR][1000 genomes]
rs17159609	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1830384	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1830385	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1830386	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1835404	1.00[AMR][1000 genomes]
rs1919288	1.00[AMR][1000 genomes]
rs1919289	1.00[AMR][1000 genomes]
rs28366993	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28379695	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28395450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28412718	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28428821	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28450350	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28451585	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28457219	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28503172	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28576399	1.00[AMR][1000 genomes]
rs28610512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28618178	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28648964	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28667540	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28715185	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41518350	1.00[AMR][1000 genomes]
rs4398846	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57698546	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57948301	1.00[AMR][1000 genomes]
rs58279956	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58992844	1.00[AMR][1000 genomes]
rs59572545	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9655926	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9655927	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9656563	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9886001	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2422324	chr7:84530290-84944913	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84534200-84537600	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:84534400-84542600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:84534800-84539200	Weak transcription	Gastric	stomach
4	chr7:84536000-84536800	Enhancers	K562	blood
5	chr7:84536400-84537800	Enhancers	Fetal Heart	heart
6	chr7:84536400-84537800	Enhancers	Fetal Stomach	stomach
7	chr7:84536400-84537800	Enhancers	Rectal Smooth Muscle	rectum
8	chr7:84536400-84542000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:84536400-84542600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:84536600-84537200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links