Variant report

Variant	rs10239054
Chromosome Location	chr7:84485929-84485930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:84485903..84488713-chr7:84495287..84497033,2	K562	blood:

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10085820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10216037	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10224192	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10225298	1.00[AFR][1000 genomes]
rs10225557	1.00[AFR][1000 genomes]
rs10226288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10226313	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10227472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10227790	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10229726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10230012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10230209	1.00[AMR][1000 genomes]
rs10230231	0.83[AFR][1000 genomes]
rs10231169	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234337	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235804	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10238552	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10238803	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242855	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10243859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10244922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10247729	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248205	1.00[YRI][hapmap]
rs10248781	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10249004	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10250111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10253650	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254645	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10254905	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256709	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256725	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10256947	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10257078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10257324	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258219	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10258244	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10260523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10264103	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10264147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10268505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10269671	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271353	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273523	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10273650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10274814	0.92[AFR][1000 genomes]
rs10275794	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10276443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277419	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10279991	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10282093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12334236	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13438389	0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1430595	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17148268	1.00[AMR][1000 genomes]
rs17148271	1.00[AMR][1000 genomes]
rs17159502	1.00[AMR][1000 genomes]
rs17159553	1.00[AMR][1000 genomes]
rs17159580	1.00[AMR][1000 genomes]
rs17159589	1.00[AMR][1000 genomes]
rs17159590	1.00[AMR][1000 genomes]
rs17159596	1.00[AMR][1000 genomes]
rs17159599	1.00[AMR][1000 genomes]
rs1830384	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1830385	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1830386	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1835402	0.92[AFR][1000 genomes]
rs1835404	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1919288	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1919289	1.00[AMR][1000 genomes]
rs28366993	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28379695	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28395450	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28412718	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28428821	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28450350	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28451585	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28457219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28503172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28576399	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28610512	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28618178	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28648964	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28667540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28715185	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4398846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57698546	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57948301	1.00[AMR][1000 genomes]
rs58279956	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58992844	1.00[AMR][1000 genomes]
rs59572545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9655926	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9655927	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9656563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9886001	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv831050	chr7:84355996-84527261	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84477800-84486600	Weak transcription	K562	blood
2	chr7:84485400-84486200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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