Variant report

Variant	rs58992844
Chromosome Location	chr7:84422982-84422983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:84416565..84419447-chr7:84421178..84423441,2	K562	blood:
2	chr7:84172414..84174090-chr7:84421942..84424878,2	K562	blood:
3	chr7:84416565..84420321-chr7:84421212..84424088,3	K562	blood:

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10085820	1.00[AMR][1000 genomes]
rs10216037	1.00[AMR][1000 genomes]
rs10224192	1.00[AMR][1000 genomes]
rs10226288	1.00[AMR][1000 genomes]
rs10226313	1.00[AMR][1000 genomes]
rs10227472	1.00[AMR][1000 genomes]
rs10227790	1.00[AMR][1000 genomes]
rs10229365	1.00[AMR][1000 genomes]
rs10229476	1.00[AMR][1000 genomes]
rs10229726	1.00[AMR][1000 genomes]
rs10230012	1.00[AMR][1000 genomes]
rs10230209	1.00[AMR][1000 genomes]
rs10231169	1.00[AMR][1000 genomes]
rs10231227	1.00[AMR][1000 genomes]
rs10234337	1.00[AMR][1000 genomes]
rs10234993	1.00[AMR][1000 genomes]
rs10235044	1.00[AMR][1000 genomes]
rs10235804	1.00[AMR][1000 genomes]
rs10238552	1.00[AMR][1000 genomes]
rs10238803	1.00[AMR][1000 genomes]
rs10239054	1.00[AMR][1000 genomes]
rs10241357	1.00[AMR][1000 genomes]
rs10242005	1.00[AMR][1000 genomes]
rs10242855	1.00[AMR][1000 genomes]
rs10243021	1.00[AMR][1000 genomes]
rs10243755	1.00[AMR][1000 genomes]
rs10243828	1.00[AMR][1000 genomes]
rs10243859	1.00[AMR][1000 genomes]
rs10244922	1.00[AMR][1000 genomes]
rs10247729	1.00[AMR][1000 genomes]
rs10248781	1.00[AMR][1000 genomes]
rs10249004	1.00[AMR][1000 genomes]
rs10250111	1.00[AMR][1000 genomes]
rs10252528	1.00[AMR][1000 genomes]
rs10252836	1.00[AMR][1000 genomes]
rs10253565	1.00[AMR][1000 genomes]
rs10253650	1.00[AMR][1000 genomes]
rs10254493	1.00[AMR][1000 genomes]
rs10254645	1.00[AMR][1000 genomes]
rs10254905	1.00[AMR][1000 genomes]
rs10256352	1.00[AMR][1000 genomes]
rs10256709	1.00[AMR][1000 genomes]
rs10256725	1.00[AMR][1000 genomes]
rs10256947	1.00[AMR][1000 genomes]
rs10257078	1.00[AMR][1000 genomes]
rs10257324	1.00[AMR][1000 genomes]
rs10258219	1.00[AMR][1000 genomes]
rs10258244	1.00[AMR][1000 genomes]
rs10260523	1.00[AMR][1000 genomes]
rs10264103	1.00[AMR][1000 genomes]
rs10264147	1.00[AMR][1000 genomes]
rs10268505	1.00[AMR][1000 genomes]
rs10269671	1.00[AMR][1000 genomes]
rs10271353	1.00[AMR][1000 genomes]
rs10271605	1.00[AMR][1000 genomes]
rs10273523	1.00[AMR][1000 genomes]
rs10273534	1.00[AMR][1000 genomes]
rs10273650	1.00[AMR][1000 genomes]
rs10275794	1.00[AMR][1000 genomes]
rs10276443	1.00[AMR][1000 genomes]
rs10277419	1.00[AMR][1000 genomes]
rs10279991	1.00[AMR][1000 genomes]
rs10282093	1.00[AMR][1000 genomes]
rs12334236	1.00[AMR][1000 genomes]
rs13438389	1.00[AMR][1000 genomes]
rs1430595	1.00[AMR][1000 genomes]
rs17148268	1.00[AMR][1000 genomes]
rs17159502	1.00[AMR][1000 genomes]
rs1830384	1.00[AMR][1000 genomes]
rs1830385	1.00[AMR][1000 genomes]
rs1830386	1.00[AMR][1000 genomes]
rs1835404	1.00[AMR][1000 genomes]
rs1919288	1.00[AMR][1000 genomes]
rs1919289	1.00[AMR][1000 genomes]
rs28366993	1.00[AMR][1000 genomes]
rs28379695	1.00[AMR][1000 genomes]
rs28395450	1.00[AMR][1000 genomes]
rs28412718	1.00[AMR][1000 genomes]
rs28428821	1.00[AMR][1000 genomes]
rs28450350	1.00[AMR][1000 genomes]
rs28451585	1.00[AMR][1000 genomes]
rs28457219	1.00[AMR][1000 genomes]
rs28503172	1.00[AMR][1000 genomes]
rs28576399	1.00[AMR][1000 genomes]
rs28610512	1.00[AMR][1000 genomes]
rs28618178	1.00[AMR][1000 genomes]
rs28648964	1.00[AMR][1000 genomes]
rs28667540	1.00[AMR][1000 genomes]
rs28715185	1.00[AMR][1000 genomes]
rs4398846	1.00[AMR][1000 genomes]
rs57698546	1.00[AMR][1000 genomes]
rs58279956	1.00[AMR][1000 genomes]
rs59572545	1.00[AMR][1000 genomes]
rs9655926	1.00[AMR][1000 genomes]
rs9655927	1.00[AMR][1000 genomes]
rs9656563	1.00[AMR][1000 genomes]
rs9886001	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv888641	chr7:84168615-84453100	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv888643	chr7:84196258-84453100	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2762684	chr7:84218035-84444871	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv831049	chr7:84277599-84475710	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv831050	chr7:84355996-84527261	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84418800-84440400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:84420000-84423000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:84422200-84423200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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