Variant report

Variant	rs10225557
Chromosome Location	chr7:84443965-84443966
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:84438950..84442857-chr7:84443325..84445817,3	K562	blood:
2	chr7:84443133..84444638-chr7:84447039..84448903,2	MCF-7	breast:
3	chr7:84442753..84444539-chr7:84451707..84453492,2	K562	blood:
4	chr7:84434894..84436647-chr7:84442217..84444048,2	K562	blood:

Extended variants
information (count: 157 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:149)

rs_ID	r²[population]
rs10085820	1.00[AFR][1000 genomes]
rs10216037	0.84[AFR][1000 genomes]
rs10224192	0.81[AFR][1000 genomes]
rs10225298	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10226288	1.00[AFR][1000 genomes]
rs10226313	0.96[AFR][1000 genomes]
rs10227472	1.00[AFR][1000 genomes]
rs10227790	0.84[AFR][1000 genomes]
rs10229365	1.00[AFR][1000 genomes]
rs10229476	1.00[AFR][1000 genomes]
rs10229726	1.00[AFR][1000 genomes]
rs10230012	1.00[AFR][1000 genomes]
rs10230231	0.83[AFR][1000 genomes]
rs10231169	0.81[AFR][1000 genomes]
rs10231227	1.00[AFR][1000 genomes]
rs10234337	0.84[AFR][1000 genomes]
rs10234993	1.00[AFR][1000 genomes]
rs10235044	1.00[AFR][1000 genomes]
rs10235804	0.81[AFR][1000 genomes]
rs10238552	0.84[AFR][1000 genomes]
rs10238680	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10238803	0.84[AFR][1000 genomes]
rs10239054	1.00[AFR][1000 genomes]
rs10241357	1.00[AFR][1000 genomes]
rs10242005	1.00[AFR][1000 genomes]
rs10242855	0.81[AFR][1000 genomes]
rs10243021	1.00[AFR][1000 genomes]
rs10243755	1.00[AFR][1000 genomes]
rs10243828	1.00[AFR][1000 genomes]
rs10243859	1.00[AFR][1000 genomes]
rs10244922	1.00[AFR][1000 genomes]
rs10247729	0.84[AFR][1000 genomes]
rs10248781	0.84[AFR][1000 genomes]
rs10249004	0.84[AFR][1000 genomes]
rs10250111	1.00[AFR][1000 genomes]
rs10252528	1.00[AFR][1000 genomes]
rs10252836	1.00[AFR][1000 genomes]
rs10253565	1.00[AFR][1000 genomes]
rs10253650	0.84[AFR][1000 genomes]
rs10253819	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10254493	1.00[AFR][1000 genomes]
rs10254645	0.84[AFR][1000 genomes]
rs10254761	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10254905	0.84[AFR][1000 genomes]
rs10256352	1.00[AFR][1000 genomes]
rs10256709	0.84[AFR][1000 genomes]
rs10256725	0.84[AFR][1000 genomes]
rs10256947	0.84[AFR][1000 genomes]
rs10257078	1.00[AFR][1000 genomes]
rs10257324	0.84[AFR][1000 genomes]
rs10258219	0.84[AFR][1000 genomes]
rs10258244	0.84[AFR][1000 genomes]
rs10260523	1.00[AFR][1000 genomes]
rs10264103	0.84[AFR][1000 genomes]
rs10264147	1.00[AFR][1000 genomes]
rs10265448	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10268505	1.00[AFR][1000 genomes]
rs10269671	0.92[AFR][1000 genomes]
rs10271353	1.00[AFR][1000 genomes]
rs10271605	1.00[AFR][1000 genomes]
rs10273523	0.84[AFR][1000 genomes]
rs10273534	1.00[AFR][1000 genomes]
rs10273650	1.00[AFR][1000 genomes]
rs10274814	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10275794	0.84[AFR][1000 genomes]
rs10276443	1.00[AFR][1000 genomes]
rs10277419	0.81[AFR][1000 genomes]
rs10279991	0.92[AFR][1000 genomes]
rs10282093	1.00[AFR][1000 genomes]
rs10499881	1.00[EUR][1000 genomes]
rs12334236	0.81[AFR][1000 genomes]
rs1318546	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13437628	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13438389	1.00[AFR][1000 genomes]
rs1406341	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1430595	0.84[AFR][1000 genomes]
rs1583146	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1594395	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17159213	1.00[EUR][1000 genomes]
rs17159219	1.00[EUR][1000 genomes]
rs17159404	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1811353	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1830384	0.84[AFR][1000 genomes]
rs1830385	0.84[AFR][1000 genomes]
rs1830386	0.84[AFR][1000 genomes]
rs1835402	0.92[AFR][1000 genomes]
rs1835404	0.84[AFR][1000 genomes]
rs1864526	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1864527	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1897156	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1919288	0.84[AFR][1000 genomes]
rs1997302	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2293574	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28366993	0.84[AFR][1000 genomes]
rs28379695	0.84[AFR][1000 genomes]
rs28395450	0.81[AFR][1000 genomes]
rs28412718	0.84[AFR][1000 genomes]
rs28428821	0.84[AFR][1000 genomes]
rs28450350	0.84[AFR][1000 genomes]
rs28451585	0.84[AFR][1000 genomes]
rs28457219	1.00[AFR][1000 genomes]
rs28503172	1.00[AFR][1000 genomes]
rs28576399	0.92[AFR][1000 genomes]
rs28610512	0.81[AFR][1000 genomes]
rs28618178	0.84[AFR][1000 genomes]
rs28648964	0.84[AFR][1000 genomes]
rs28667540	1.00[AFR][1000 genomes]
rs28715185	0.84[AFR][1000 genomes]
rs4128623	0.89[ASN][1000 genomes]
rs4236672	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4283991	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4283992	0.84[ASN][1000 genomes]
rs4286890	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4338048	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4398846	1.00[AFR][1000 genomes]
rs4549716	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4551285	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4563832	0.88[ASN][1000 genomes]
rs4595076	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4621727	1.00[EUR][1000 genomes]
rs4623351	1.00[EUR][1000 genomes]
rs4728558	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4728568	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4732572	1.00[EUR][1000 genomes]
rs4732574	1.00[EUR][1000 genomes]
rs4732583	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4732584	0.88[ASN][1000 genomes]
rs4732585	0.88[ASN][1000 genomes]
rs4732587	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4732590	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4732591	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4732592	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57698546	0.84[AFR][1000 genomes]
rs58079066	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58279956	0.84[AFR][1000 genomes]
rs58836788	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59138424	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59348972	0.90[ASN][1000 genomes]
rs59572545	1.00[AFR][1000 genomes]
rs61463020	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73710992	1.00[EUR][1000 genomes]
rs73713541	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73713553	0.90[ASN][1000 genomes]
rs73713556	0.90[ASN][1000 genomes]
rs934302	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9655926	0.84[AFR][1000 genomes]
rs9655927	0.84[AFR][1000 genomes]
rs9656563	1.00[AFR][1000 genomes]
rs9886001	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv888641	chr7:84168615-84453100	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv888643	chr7:84196258-84453100	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2762684	chr7:84218035-84444871	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv831049	chr7:84277599-84475710	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv831050	chr7:84355996-84527261	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84439600-84450000	Weak transcription	K562	blood

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