Variant report

Variant	rs1864527
Chromosome Location	chr7:84499715-84499716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:84165204..84166004-chr7:84499385..84500020,2	MCF-7	breast:
2	chr7:84165144..84166088-chr7:84499191..84500054,5	MCF-7	breast:
3	chr7:84498615..84500750-chr7:84525204..84526941,2	K562	blood:
4	chr7:84498248..84502734-chr7:84505735..84508151,4	K562	blood:
5	chr7:84158432..84159358-chr7:84499153..84500086,4	MCF-7	breast:
6	chr7:84158432..84159047-chr7:84499527..84500086,2	MCF-7	breast:
7	chr7:84474585..84476459-chr7:84497349..84500162,2	K562	blood:
8	chr7:84165588..84166207-chr7:84499370..84499987,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000232605	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10225298	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10225557	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10238680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10253819	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10254761	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10265448	0.81[CHB][hapmap];0.84[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10274814	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1318546	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13437628	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1406341	0.96[ASN][1000 genomes]
rs1583146	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1594395	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17159404	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17159577	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs1811353	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1864526	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1897156	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1997302	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2293574	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4128623	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4283992	0.80[AMR][1000 genomes]
rs4286890	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4563832	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4728568	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs4732584	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4732585	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4732587	0.84[ASN][1000 genomes]
rs4732590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4732591	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4732592	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58079066	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs58836788	0.96[ASN][1000 genomes]
rs59138424	0.84[ASN][1000 genomes]
rs59348972	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6948339	0.81[ASN][1000 genomes]
rs73713541	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73713553	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73713556	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7788552	0.82[AMR][1000 genomes]
rs934302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv831050	chr7:84355996-84527261	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84491400-84504400	Weak transcription	K562	blood

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