Variant report

Variant	rs4728568
Chromosome Location	chr7:84509622-84509623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:84420135..84422964-chr7:84508124..84511065,2	K562	blood:
2	chr7:84500124..84502806-chr7:84508171..84509903,2	K562	blood:
3	chr7:84508483..84511432-chr7:84516056..84517818,2	K562	blood:
4	chr7:84475070..84479016-chr7:84505987..84511663,5	K562	blood:
5	chr7:84508797..84511350-chr7:84512443..84514442,2	K562	blood:
6	chr7:84503629..84506540-chr7:84507302..84509913,4	K562	blood:
7	chr7:84495091..84496755-chr7:84507869..84510103,2	K562	blood:
8	chr7:84453275..84455457-chr7:84508564..84511405,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000232605	Chromatin interaction
ENSG00000235243	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10225298	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10225557	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10238680	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10244742	1.00[GIH][hapmap];0.94[MEX][hapmap]
rs10253819	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10254761	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10265448	0.81[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274814	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12707698	0.80[JPT][hapmap]
rs1318546	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13437628	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1406341	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1583146	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1594395	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17159404	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17159577	0.93[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes]
rs1811353	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1864526	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1864527	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs1897156	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1997302	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2293574	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4128623	0.81[ASN][1000 genomes]
rs4286890	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4732587	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4732590	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4732591	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4732592	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58079066	0.90[ASN][1000 genomes]
rs58836788	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs59138424	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs59348972	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948339	0.84[ASN][1000 genomes]
rs73713541	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73713553	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73713556	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs934302	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv949446	chr7:84003501-84763823	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv34238	chr7:84279023-84591966	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv831050	chr7:84355996-84527261	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:84507800-84510600	Active TSS	K562	blood
2	chr7:84508400-84511200	Weak transcription	Right Atrium	heart
3	chr7:84508800-84509800	Enhancers	Fetal Brain Male	brain
4	chr7:84509400-84510400	Active TSS	Placenta	Placenta

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