Variant report
Variant | rs10265448 |
---|---|
Chromosome Location | chr7:84506397-84506398 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:84475070..84479016-chr7:84505987..84511663,5 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000235243 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10225298 | 0.82[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs10225557 | 0.80[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs10238680 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10244742 | 1.00[GIH][hapmap] |
rs10253819 | 0.96[ASN][1000 genomes] |
rs10254761 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10274814 | 0.88[ASN][1000 genomes] |
rs1318546 | 0.97[ASN][1000 genomes] |
rs13437628 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1406341 | 0.94[ASN][1000 genomes] |
rs1583146 | 0.88[ASN][1000 genomes] |
rs1594395 | 0.81[CHB][hapmap];1.00[ASN][1000 genomes] |
rs17159404 | 0.97[ASN][1000 genomes] |
rs17159577 | 0.80[CHB][hapmap] |
rs1811353 | 0.97[ASN][1000 genomes] |
rs1864526 | 1.00[ASN][1000 genomes] |
rs1864527 | 0.81[CHB][hapmap];0.84[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs1897156 | 0.88[ASN][1000 genomes] |
rs1997302 | 0.97[ASN][1000 genomes] |
rs2293574 | 0.97[ASN][1000 genomes] |
rs4128623 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs4286890 | 0.97[ASN][1000 genomes] |
rs4563832 | 0.80[AMR][1000 genomes] |
rs4728568 | 0.81[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4732585 | 0.80[AMR][1000 genomes] |
rs4732587 | 0.81[ASN][1000 genomes] |
rs4732590 | 0.81[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.97[ASN][1000 genomes] |
rs4732591 | 0.81[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.97[ASN][1000 genomes] |
rs4732592 | 0.81[CHB][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs58079066 | 0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs58836788 | 0.94[ASN][1000 genomes] |
rs59138424 | 0.81[ASN][1000 genomes] |
rs59348972 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6948339 | 0.84[ASN][1000 genomes] |
rs73713541 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs73713553 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73713556 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs934302 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv529344 | chr7:83714286-84592857 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
2 | nsv949446 | chr7:84003501-84763823 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
3 | esv34238 | chr7:84279023-84591966 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv831050 | chr7:84355996-84527261 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv970546 | chr7:84505812-84507413 | Flanking Active TSS Weak transcription Enhancers | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:84505800-84507200 | Weak transcription | K562 | blood |