Variant report

Variant	rs59746868
Chromosome Location	chr10:98137972-98137973
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr10:98137854-98138326	MCF10A-Er-Src	breast:	n/a	n/a
2	KAP1	chr10:98137505-98138041	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
TLL2	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7900088	0.87[ASN][1000 genomes]
rs7900916	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047657	chr10:98123234-98183487	Weak transcription Active TSS Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98135200-98139200	Enhancers	Rectal Smooth Muscle	rectum
2	chr10:98135200-98139400	Enhancers	Colon Smooth Muscle	Colon
3	chr10:98135200-98139600	Weak transcription	Colonic Mucosa	Colon
4	chr10:98135400-98139600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:98135400-98140800	Weak transcription	Hela-S3	cervix
6	chr10:98135400-98149600	Weak transcription	Right Atrium	heart
7	chr10:98135600-98138400	Weak transcription	Pancreas	Pancrea
8	chr10:98135600-98139600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:98135600-98141000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:98136800-98139000	Enhancers	Placenta	Placenta
11	chr10:98137200-98138400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:98137200-98138800	Enhancers	Left Ventricle	heart
13	chr10:98137200-98138800	Enhancers	Stomach Smooth Muscle	stomach
14	chr10:98137200-98139200	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr10:98137200-98139200	Enhancers	Lung	lung
16	chr10:98137400-98138000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:98137400-98138000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:98137400-98138000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr10:98137400-98138000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
20	chr10:98137400-98138400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:98137400-98138400	Enhancers	Fetal Heart	heart
22	chr10:98137600-98138000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr10:98137600-98138000	Bivalent Enhancer	Fetal Muscle Leg	muscle
24	chr10:98137600-98138000	Enhancers	Gastric	stomach
25	chr10:98137600-98138000	Enhancers	Right Ventricle	heart
26	chr10:98137600-98138200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:98137600-98138200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:98137600-98138200	Enhancers	Esophagus	oesophagus
29	chr10:98137600-98138600	Bivalent Enhancer	NHEK	skin
30	chr10:98137600-98138800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:98137800-98138000	Enhancers	Brain Germinal Matrix	brain
32	chr10:98137800-98138600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:98137800-98138600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr10:98137800-98138800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:98137800-98138800	Enhancers	Fetal Stomach	stomach
36	chr10:98137800-98138800	Enhancers	Spleen	Spleen

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