Variant report

Variant	rs7900916
Chromosome Location	chr10:98137026-98137027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12098589	1.00[CEU][hapmap]
rs1923699	1.00[CEU][hapmap]
rs1923700	1.00[CEU][hapmap]
rs4919008	1.00[CEU][hapmap]
rs4919009	1.00[CEU][hapmap]
rs59746868	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047657	chr10:98123234-98183487	Weak transcription Active TSS Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98135200-98137200	Weak transcription	Left Ventricle	heart
2	chr10:98135200-98137200	Weak transcription	Lung	lung
3	chr10:98135200-98137400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:98135200-98137400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:98135200-98137400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:98135200-98137600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:98135200-98137600	Weak transcription	Esophagus	oesophagus
8	chr10:98135200-98137600	Weak transcription	Gastric	stomach
9	chr10:98135200-98137600	Enhancers	NHEK	skin
10	chr10:98135200-98137800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:98135200-98139200	Enhancers	Rectal Smooth Muscle	rectum
12	chr10:98135200-98139400	Enhancers	Colon Smooth Muscle	Colon
13	chr10:98135200-98139600	Weak transcription	Colonic Mucosa	Colon
14	chr10:98135400-98137400	Weak transcription	Fetal Heart	heart
15	chr10:98135400-98137800	Weak transcription	Spleen	Spleen
16	chr10:98135400-98139600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr10:98135400-98140800	Weak transcription	Hela-S3	cervix
18	chr10:98135400-98149600	Weak transcription	Right Atrium	heart
19	chr10:98135600-98137200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:98135600-98137600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:98135600-98137600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:98135600-98137600	Weak transcription	Right Ventricle	heart
23	chr10:98135600-98137800	Weak transcription	Brain Germinal Matrix	brain
24	chr10:98135600-98138400	Weak transcription	Pancreas	Pancrea
25	chr10:98135600-98139600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr10:98135600-98141000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:98135800-98137200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr10:98136800-98137200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr10:98136800-98139000	Enhancers	Placenta	Placenta
30	chr10:98137000-98137400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links