Variant report

Variant	rs1923699
Chromosome Location	chr10:98149451-98149452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1003025	0.88[EUR][1000 genomes]
rs10736102	1.00[MEX][hapmap]
rs10736103	1.00[MEX][hapmap]
rs12098589	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12245611	0.83[EUR][1000 genomes]
rs12258610	1.00[MEX][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs12258909	1.00[MEX][hapmap]
rs12266884	0.83[EUR][1000 genomes]
rs1923700	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4919008	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes]
rs4919009	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes]
rs59794161	0.83[EUR][1000 genomes]
rs61623661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74153642	0.94[EUR][1000 genomes]
rs74153644	0.94[EUR][1000 genomes]
rs74153645	0.94[EUR][1000 genomes]
rs7900916	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047657	chr10:98123234-98183487	Weak transcription Active TSS Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98135400-98149600	Weak transcription	Right Atrium	heart
2	chr10:98141400-98150200	Weak transcription	Spleen	Spleen
3	chr10:98144600-98149600	Weak transcription	Esophagus	oesophagus
4	chr10:98145400-98156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:98148400-98150400	Enhancers	Colon Smooth Muscle	Colon
6	chr10:98148400-98151000	Enhancers	Brain Germinal Matrix	brain
7	chr10:98149000-98151000	Enhancers	Stomach Smooth Muscle	stomach
8	chr10:98149000-98151200	Enhancers	Pancreas	Pancrea
9	chr10:98149000-98151400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr10:98149000-98151800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:98149000-98153400	Enhancers	Fetal Brain Male	brain
12	chr10:98149000-98153800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:98149200-98149800	Bivalent Enhancer	Rectal Smooth Muscle	rectum
14	chr10:98149200-98150000	Enhancers	Right Ventricle	heart
15	chr10:98149200-98150600	Enhancers	Gastric	stomach
16	chr10:98149200-98151200	Enhancers	Left Ventricle	heart
17	chr10:98149200-98151400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr10:98149200-98152600	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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