Variant report

Variant	rs12098589
Chromosome Location	chr10:98148873-98148874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1003025	0.82[EUR][1000 genomes]
rs10736102	0.84[EUR][1000 genomes]
rs10736103	0.84[EUR][1000 genomes]
rs12258909	0.84[EUR][1000 genomes]
rs1923699	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1923700	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4919008	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4919009	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61623661	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74153642	0.88[EUR][1000 genomes]
rs74153644	0.88[EUR][1000 genomes]
rs74153645	0.88[EUR][1000 genomes]
rs7900916	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047657	chr10:98123234-98183487	Weak transcription Active TSS Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98135400-98149600	Weak transcription	Right Atrium	heart
2	chr10:98140000-98149200	Weak transcription	Gastric	stomach
3	chr10:98141400-98150200	Weak transcription	Spleen	Spleen
4	chr10:98144600-98149600	Weak transcription	Esophagus	oesophagus
5	chr10:98145400-98156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:98146800-98149000	Weak transcription	Pancreas	Pancrea
7	chr10:98147200-98149000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:98147600-98149000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:98148200-98149200	Enhancers	Rectal Smooth Muscle	rectum
10	chr10:98148400-98150400	Enhancers	Colon Smooth Muscle	Colon
11	chr10:98148400-98151000	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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