Variant report

Variant	rs74153644
Chromosome Location	chr10:98117709-98117710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1003025	0.94[EUR][1000 genomes]
rs10736102	0.84[EUR][1000 genomes]
rs10736103	0.84[EUR][1000 genomes]
rs12098589	0.88[EUR][1000 genomes]
rs12258610	0.89[EUR][1000 genomes]
rs12258909	0.84[EUR][1000 genomes]
rs1923699	0.94[EUR][1000 genomes]
rs1923700	0.94[EUR][1000 genomes]
rs4919008	0.88[EUR][1000 genomes]
rs4919009	0.88[EUR][1000 genomes]
rs59794161	0.89[EUR][1000 genomes]
rs61623661	0.94[EUR][1000 genomes]
rs74153642	1.00[EUR][1000 genomes]
rs74153645	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98106200-98126000	Weak transcription	Aorta	Aorta
2	chr10:98115000-98119000	Active TSS	Brain Anterior Caudate	brain
3	chr10:98115200-98119600	Active TSS	Brain Angular Gyrus	brain
4	chr10:98116000-98118800	Active TSS	Brain Hippocampus Middle	brain
5	chr10:98116400-98118800	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr10:98117000-98123800	Weak transcription	Right Atrium	heart
7	chr10:98117000-98134400	Weak transcription	Thymus	Thymus
8	chr10:98117400-98119000	Active TSS	Brain Cingulate Gyrus	brain
9	chr10:98117600-98118800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:98117600-98119000	Active TSS	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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