Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97776720..97777641-chr10:98094417..98094947,2	MCF-7	breast:
2	chr10:98094742..98095276-chr10:98134808..98135670,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095587	Chromatin interaction

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1003025	0.94[EUR][1000 genomes]
rs10736101	0.89[EUR][1000 genomes]
rs10736102	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.95[EUR][1000 genomes]
rs10736103	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.95[EUR][1000 genomes]
rs11188715	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12258909	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.95[EUR][1000 genomes]
rs12266884	1.00[CEU][hapmap]
rs12355449	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1923699	1.00[MEX][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs1923700	1.00[MEX][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs4919008	1.00[MEX][hapmap]
rs4919009	1.00[MEX][hapmap]
rs59794161	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61623661	0.83[EUR][1000 genomes]
rs74153642	0.89[EUR][1000 genomes]
rs74153644	0.89[EUR][1000 genomes]
rs74153645	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98089600-98095200	Genic enhancers	Dnd41	blood
2	chr10:98092000-98095000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr10:98092200-98096200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:98092600-98097800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:98094400-98095200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr10:98094400-98099400	Strong transcription	Thymus	Thymus
7	chr10:98094600-98095000	Enhancers	Liver	Liver
8	chr10:98094600-98095000	Bivalent Enhancer	A549	lung
9	chr10:98094600-98095200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:98094600-98095200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr10:98094600-98095200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr10:98094600-98095200	Enhancers	Primary hematopoietic stem cells	blood
13	chr10:98094600-98095200	Enhancers	Brain Angular Gyrus	brain
14	chr10:98094600-98095200	Enhancers	Brain Anterior Caudate	brain
15	chr10:98094600-98095200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr10:98094600-98095200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:98094600-98095200	Enhancers	Brain Substantia Nigra	brain
18	chr10:98094800-98095000	Genic enhancers	Fetal Thymus	thymus
19	chr10:98094800-98095200	Enhancers	H9 Cell Line	embryonic stem cell
20	chr10:98094800-98095200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:98094800-98095200	Enhancers	Brain Hippocampus Middle	brain

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