Variant report

Variant	rs11188715
Chromosome Location	chr10:98084449-98084450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1003025	0.83[EUR][1000 genomes]
rs10736101	1.00[EUR][1000 genomes]
rs10736102	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10736103	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12258610	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12258909	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12266884	1.00[CEU][hapmap]
rs12355449	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs59794161	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98075400-98088800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr10:98077800-98089600	Strong transcription	Dnd41	blood
3	chr10:98077800-98091800	Strong transcription	Thymus	Thymus
4	chr10:98080200-98085000	Weak transcription	GM12878-XiMat	blood
5	chr10:98080400-98089200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:98084200-98084800	Enhancers	Duodenum Mucosa	Duodenum
7	chr10:98084400-98089000	Strong transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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