Variant report

Variant	rs59794161
Chromosome Location	chr10:98092034-98092035
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1003025	0.94[EUR][1000 genomes]
rs10736101	0.89[EUR][1000 genomes]
rs10736102	0.95[EUR][1000 genomes]
rs10736103	0.95[EUR][1000 genomes]
rs11188715	0.89[EUR][1000 genomes]
rs12258610	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12258909	0.95[EUR][1000 genomes]
rs12355449	0.89[EUR][1000 genomes]
rs1923699	0.83[EUR][1000 genomes]
rs1923700	0.83[EUR][1000 genomes]
rs61623661	0.83[EUR][1000 genomes]
rs74153642	0.89[EUR][1000 genomes]
rs74153644	0.89[EUR][1000 genomes]
rs74153645	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98089600-98092200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:98089600-98092600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:98089600-98095200	Genic enhancers	Dnd41	blood
4	chr10:98091200-98094800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:98091600-98094800	Enhancers	Fetal Thymus	thymus
6	chr10:98091800-98093200	Genic enhancers	Thymus	Thymus
7	chr10:98091800-98093800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr10:98091800-98094000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr10:98092000-98094200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr10:98092000-98095000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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