Variant report

Variant	rs59760682
Chromosome Location	chr13:75979689-75979690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17064351	0.86[AFR][1000 genomes]
rs59522855	0.90[AFR][1000 genomes]
rs7321314	0.87[AFR][1000 genomes]
rs7338140	1.00[EUR][1000 genomes]
rs7982904	1.00[EUR][1000 genomes]
rs7986697	0.86[AFR][1000 genomes]
rs7995247	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498067	chr13:75178898-76012362	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2761803	chr13:75943309-76161774	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv455987	chr13:75972846-76090084	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv562346	chr13:75972846-76090084	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:75972800-75980000	Weak transcription	Osteobl	bone
2	chr13:75973400-75987200	Weak transcription	Gastric	stomach
3	chr13:75974400-75980200	Weak transcription	NH-A	brain
4	chr13:75975200-75981000	Weak transcription	Pancreas	Pancrea
5	chr13:75975600-75980600	Weak transcription	Right Atrium	heart
6	chr13:75976200-75982000	Enhancers	Fetal Heart	heart
7	chr13:75976600-75980800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:75976600-75981000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:75977200-75984400	Weak transcription	Lung	lung
10	chr13:75977400-75980000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr13:75977400-75980200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr13:75977400-75980600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:75977400-75984200	Weak transcription	Left Ventricle	heart
14	chr13:75977400-75984200	Weak transcription	GM12878-XiMat	blood
15	chr13:75977400-75990600	Weak transcription	Brain Anterior Caudate	brain
16	chr13:75977600-75980000	Weak transcription	Fetal Lung	lung
17	chr13:75978000-75982000	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr13:75978000-75982400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr13:75978400-75980200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr13:75978400-75981200	Enhancers	Fetal Kidney	kidney
21	chr13:75978400-75981800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr13:75978800-75980000	Enhancers	Ovary	ovary
23	chr13:75979000-75979800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr13:75979000-75979800	Enhancers	Psoas Muscle	Psoas
25	chr13:75979000-75979800	Enhancers	HSMM	muscle
26	chr13:75979000-75981000	Enhancers	Fetal Muscle Leg	muscle
27	chr13:75979200-75979800	Weak transcription	Adipose Nuclei	Adipose
28	chr13:75979200-75980200	Weak transcription	HepG2	liver
29	chr13:75979400-75979800	Enhancers	Fetal Muscle Trunk	muscle
30	chr13:75979400-75979800	Weak transcription	HSMMtube	muscle
31	chr13:75979600-75979800	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr13:75979600-75980000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr13:75979600-75980000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr13:75979600-75981000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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