Variant report

Variant	rs59761353
Chromosome Location	chr11:26930863-26930864
allele	-/TTAT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10835084	0.82[EUR][1000 genomes]
rs12275216	0.82[EUR][1000 genomes]
rs12275357	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12279670	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12280480	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12282988	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12287918	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12288441	0.82[EUR][1000 genomes]
rs12577148	0.82[EUR][1000 genomes]
rs1450220	0.82[EUR][1000 genomes]
rs1450221	0.82[EUR][1000 genomes]
rs16916312	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4923405	0.80[EUR][1000 genomes]
rs4923408	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56361643	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58646119	0.81[EUR][1000 genomes]
rs58789402	0.81[EUR][1000 genomes]
rs60690634	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7101730	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7105515	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7111033	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9666797	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv897146	chr11:26913936-27019331	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv983219	chr11:26926565-26932064	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26926000-26936400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:26926400-26931600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr11:26927000-26931800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:26927200-26931800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:26927200-26932200	Weak transcription	Fetal Lung	lung
6	chr11:26927200-26936200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:26927400-26931800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:26928000-26932000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:26930200-26933200	Enhancers	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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