Variant report

Variant	rs12287918
Chromosome Location	chr11:26951744-26951745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26951076..26953740-chr11:26955796..26957313,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10835084	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11029745	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12275216	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12275357	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12279670	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12280480	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12282988	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12288441	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12574167	0.95[ASN][1000 genomes]
rs12574501	0.95[ASN][1000 genomes]
rs12577148	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1450220	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1450221	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16916312	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1822893	0.89[ASN][1000 genomes]
rs1822894	0.89[ASN][1000 genomes]
rs1901076	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2350934	0.83[JPT][hapmap]
rs4922777	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4923405	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4923408	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56361643	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58646119	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58789402	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59761353	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60690634	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61888261	0.98[ASN][1000 genomes]
rs6484255	0.94[ASN][1000 genomes]
rs7101730	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7105515	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7108314	0.83[JPT][hapmap]
rs7111033	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9666797	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv897146	chr11:26913936-27019331	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv949332	chr11:26935972-27223492	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26949000-26953400	Enhancers	Colon Smooth Muscle	Colon
2	chr11:26950000-26952800	Weak transcription	Ovary	ovary
3	chr11:26950200-26952200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:26951000-26953200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:26951000-26953600	Enhancers	HSMMtube	muscle
6	chr11:26951400-26953200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:26951400-26953600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr11:26951600-26951800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:26951600-26952400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:26951600-26953000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr11:26951600-26953600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:26951600-26953600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:26951600-26953600	Enhancers	HSMM	muscle

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