Variant report

Variant	rs1901076
Chromosome Location	chr11:26920907-26920908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26915750..26917810-chr11:26918907..26921852,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10835084	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11029745	0.90[ASN][1000 genomes]
rs11819813	0.81[EUR][1000 genomes]
rs12275216	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12275357	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12279670	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12280480	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12282988	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12287918	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12288441	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12574167	0.93[ASN][1000 genomes]
rs12574501	0.93[ASN][1000 genomes]
rs12574926	0.82[EUR][1000 genomes]
rs12577148	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1450220	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1450221	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16916312	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1822893	0.83[ASN][1000 genomes]
rs1822894	0.83[ASN][1000 genomes]
rs2350932	0.82[ASN][1000 genomes]
rs2350934	0.83[JPT][hapmap]
rs4329641	0.82[ASN][1000 genomes]
rs4922777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923398	0.81[EUR][1000 genomes]
rs4923400	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4923405	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4923408	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56361643	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58646119	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58789402	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58878618	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60690634	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61888261	0.95[ASN][1000 genomes]
rs6484255	0.87[ASN][1000 genomes]
rs68145022	0.81[EUR][1000 genomes]
rs7101730	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7105515	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7108314	0.83[JPT][hapmap]
rs7111033	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9666797	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv897146	chr11:26913936-27019331	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26913800-26927200	Weak transcription	Esophagus	oesophagus
2	chr11:26918800-26925400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:26919200-26922400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:26919400-26922400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links