Variant report

Variant	rs4923400
Chromosome Location	chr11:26903499-26903500
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10835082	0.88[ASN][1000 genomes]
rs10835084	0.81[ASN][1000 genomes]
rs11029731	0.84[ASN][1000 genomes]
rs11819813	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12275216	0.81[ASN][1000 genomes]
rs12288441	0.81[ASN][1000 genomes]
rs12574926	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12577148	0.81[ASN][1000 genomes]
rs1375977	0.88[ASN][1000 genomes]
rs1597436	0.84[ASN][1000 genomes]
rs1597439	0.88[ASN][1000 genomes]
rs16916295	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16916312	0.81[ASN][1000 genomes]
rs1813043	0.84[ASN][1000 genomes]
rs1901070	0.84[ASN][1000 genomes]
rs1901071	0.84[ASN][1000 genomes]
rs1901073	0.84[ASN][1000 genomes]
rs1901076	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2350932	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4032690	0.84[ASN][1000 genomes]
rs4329641	0.97[ASN][1000 genomes]
rs4431984	0.86[ASN][1000 genomes]
rs4434955	0.86[ASN][1000 genomes]
rs4586106	0.84[ASN][1000 genomes]
rs4622215	0.84[ASN][1000 genomes]
rs4922777	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4923398	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4923405	0.81[ASN][1000 genomes]
rs55799440	0.84[ASN][1000 genomes]
rs58789402	0.81[ASN][1000 genomes]
rs58878618	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61087583	0.88[ASN][1000 genomes]
rs68145022	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7112252	0.83[ASN][1000 genomes]
rs7120570	0.86[ASN][1000 genomes]
rs9666797	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv553911	chr11:26850692-26905496	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26903200-26903600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
2	chr11:26903200-26904200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin

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