Variant report

Variant	rs12574926
Chromosome Location	chr11:26864985-26864986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11029731	0.84[ASN][1000 genomes]
rs11819813	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375978	0.88[ASN][1000 genomes]
rs1597436	0.84[ASN][1000 genomes]
rs16916292	0.87[AFR][1000 genomes]
rs16916295	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1813043	0.84[ASN][1000 genomes]
rs1901070	0.84[ASN][1000 genomes]
rs1901071	0.84[ASN][1000 genomes]
rs1901073	0.84[ASN][1000 genomes]
rs1901076	0.82[EUR][1000 genomes]
rs2122455	0.88[ASN][1000 genomes]
rs2350932	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4032690	0.84[ASN][1000 genomes]
rs4329641	0.88[ASN][1000 genomes]
rs4431984	0.82[ASN][1000 genomes]
rs4434955	0.82[ASN][1000 genomes]
rs4586106	0.84[ASN][1000 genomes]
rs4622215	0.84[ASN][1000 genomes]
rs4922777	0.82[EUR][1000 genomes]
rs4923398	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4923400	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4923405	0.81[EUR][1000 genomes]
rs55799440	0.84[ASN][1000 genomes]
rs58878618	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68145022	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7112514	0.88[ASN][1000 genomes]
rs7120570	0.82[ASN][1000 genomes]
rs7124231	0.88[ASN][1000 genomes]
rs969640	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv897142	chr11:26786121-26903063	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv467780	chr11:26792264-26876833	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv553909	chr11:26792264-26876833	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv897143	chr11:26793052-26880991	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv897144	chr11:26793052-26903063	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv897145	chr11:26794368-26876833	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv553911	chr11:26850692-26905496	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26861600-26865000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26861600-26865000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:26861800-26870600	Weak transcription	Fetal Kidney	kidney
4	chr11:26862000-26865000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:26862000-26865000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:26862000-26865400	Enhancers	Stomach Smooth Muscle	stomach
7	chr11:26862400-26865000	Enhancers	Rectal Smooth Muscle	rectum
8	chr11:26862400-26870600	Weak transcription	Psoas Muscle	Psoas
9	chr11:26862600-26866800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:26862800-26865200	Enhancers	Osteobl	bone
11	chr11:26863200-26865000	Enhancers	Fetal Muscle Leg	muscle
12	chr11:26863200-26865200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:26863200-26865200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:26863200-26865800	Enhancers	Colon Smooth Muscle	Colon
15	chr11:26863400-26865200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr11:26863800-26865000	Enhancers	NHLF	lung
17	chr11:26864000-26865400	Enhancers	NHDF-Ad	bronchial
18	chr11:26864200-26865200	Enhancers	Aorta	Aorta
19	chr11:26864200-26865400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr11:26864200-26866800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:26864200-26871000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:26864400-26865600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:26864400-26865800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:26864400-26868800	Weak transcription	Adipose Nuclei	Adipose
25	chr11:26864800-26865200	Enhancers	Right Atrium	heart
26	chr11:26864800-26868000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:26864800-26869200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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