Variant report

Variant	rs1822894
Chromosome Location	chr11:26961375-26961376
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10835084	0.84[ASN][1000 genomes]
rs11029745	0.92[ASN][1000 genomes]
rs12271524	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12275216	0.84[ASN][1000 genomes]
rs12275357	0.86[ASN][1000 genomes]
rs12277118	0.87[ASN][1000 genomes]
rs12277339	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12279221	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12279670	0.86[ASN][1000 genomes]
rs12280480	0.86[ASN][1000 genomes]
rs12282988	0.86[ASN][1000 genomes]
rs12287918	0.89[ASN][1000 genomes]
rs12288441	0.84[ASN][1000 genomes]
rs12288662	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12289852	0.87[ASN][1000 genomes]
rs12290211	0.87[ASN][1000 genomes]
rs12574167	0.89[ASN][1000 genomes]
rs12574501	0.89[ASN][1000 genomes]
rs12577148	0.84[ASN][1000 genomes]
rs12577913	0.87[ASN][1000 genomes]
rs1450220	0.82[ASN][1000 genomes]
rs1450221	0.80[ASN][1000 genomes]
rs16916312	0.85[ASN][1000 genomes]
rs1822893	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1900060	0.84[ASN][1000 genomes]
rs1901076	0.83[ASN][1000 genomes]
rs1992677	0.83[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4922777	0.81[ASN][1000 genomes]
rs4922778	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4922779	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4923405	0.84[ASN][1000 genomes]
rs4923408	0.89[ASN][1000 genomes]
rs56361643	0.86[ASN][1000 genomes]
rs58646119	0.82[ASN][1000 genomes]
rs58789402	0.84[ASN][1000 genomes]
rs60690634	0.86[ASN][1000 genomes]
rs61888261	0.87[ASN][1000 genomes]
rs6484255	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7101730	0.86[ASN][1000 genomes]
rs7105515	0.86[ASN][1000 genomes]
rs7110466	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7110482	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7110575	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7111033	0.86[ASN][1000 genomes]
rs7117332	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7122421	0.84[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7131042	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7949760	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9666797	0.84[ASN][1000 genomes]
rs986792	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs986793	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv897146	chr11:26913936-27019331	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv949332	chr11:26935972-27223492	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26953600-26967000	Weak transcription	HSMM	muscle
2	chr11:26959400-26964000	Weak transcription	NHDF-Ad	bronchial

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